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Dent Earl
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Department
Biomolecular Engineering
Web Page
SOE Webpage
Selected Publications
Earl, D. et al. (2011) Assemblathon 1: A competitive assessment of de novo short read assembly methods. Genome Research. vol. 21 (12) pp. 2224-41 doi: 10.1101/gr.126599.111
Earl, D. and vonHoldt, B.M. (2011) STRUCTURE HARVESTER: a website and program for visualiz- ing STRUCTURE output and implementing the Evanno method. Conservation Genetics Resources. doi: 10.1007/s12686-011-9548-7
Paten B., Earl D., et al. (2011) Cactus: Algorithms for genome multiple sequence alignment. Genome Research. 21: 1512-1528. doi: 10.1101/gr.123356.111 .
vonHoldt B.M., Pollinger J.P., Earl D., et al. (2011) A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids. Genome Research. 21: 1294-1305. doi: 10.1101/gr.116301.110 .
Vaske C.J., Benz S.C., Sanborn J.Z., Earl D., et al. (2010) Inference of patient-specific pathway activi- ties from multi-dimensional cancer genomics data using PARDIGM. Bioinformatics. 26(12):i237-i245 doi: 10.1093/bioinformatics/btq182 .
Degree
Ph.D in Biomolecular Engineering, 2014, UC Santa Cruz
M.S. in Biomolecular Engineering, 2010, UC Santa Cruz
M.A. in Biology, 2008, UC Los Angeles
BSOE Graduation Year
2014
BSOE Degree
Ph.D.
BSOE Thesis
EVALUATIONS AND APPLICATION OF THE THREE A’S OF GENOMICS: ASSEMBLY, ALIGNMENT, ANNOTATION.
BSOE Adviser
David Haussler
BSOE Post-Graduation Placement
Google, Inc.
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