Humans of BSOE

Gabriel Elkaim - Faculty

Electrical and Computer Engineering

“I like having an influence on the students I meet. Here, I can really help launch students’ careers in a direction they might not have thought about. I’m really proud of the students."

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Dent Earl

E-Mail Address

Department

Biomolecular Engineering

Web Page

SOE Webpage

Selected Publications

Earl, D. et al. (2011) Assemblathon 1: A competitive assessment of de novo short read assembly methods. Genome Research. vol. 21 (12) pp. 2224-41 doi: 10.1101/gr.126599.111
Earl, D. and vonHoldt, B.M. (2011) STRUCTURE HARVESTER: a website and program for visualiz- ing STRUCTURE output and implementing the Evanno method. Conservation Genetics Resources. doi: 10.1007/s12686-011-9548-7
Paten B., Earl D., et al. (2011) Cactus: Algorithms for genome multiple sequence alignment. Genome Research. 21: 1512-1528. doi: 10.1101/gr.123356.111 .
vonHoldt B.M., Pollinger J.P., Earl D., et al. (2011) A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids. Genome Research. 21: 1294-1305. doi: 10.1101/gr.116301.110 .
Vaske C.J., Benz S.C., Sanborn J.Z., Earl D., et al. (2010) Inference of patient-specific pathway activi- ties from multi-dimensional cancer genomics data using PARDIGM. Bioinformatics. 26(12):i237-i245 doi: 10.1093/bioinformatics/btq182 .

Degree

Ph.D in Biomolecular Engineering, 2014, UC Santa Cruz
M.S. in Biomolecular Engineering, 2010, UC Santa Cruz
M.A. in Biology, 2008, UC Los Angeles

BSOE Graduation Year

2014

BSOE Degree

Ph.D.

BSOE Thesis

EVALUATIONS AND APPLICATION OF THE THREE A’S OF GENOMICS: ASSEMBLY, ALIGNMENT, ANNOTATION.

BSOE Adviser

David Haussler

BSOE Post-Graduation Placement

Google, Inc.

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