Publications by Students, Postdoctoral Scholars and Faculty

2001

Shea, K. and M. Mangel. Detection of population trends in threatened coho salmon (Oncorhynchus kisutch). Canadian Journal of Fisheries and Aquatic Sciences 58:375-385

Alonzo, S.H. and M. Mangel. Survival strategies and growth of krill: avoiding predators in space and time. Marine Ecology Progress Series 209:203-217

Mangel, M. and M.V. Abrahams. Age and longevity in fish, with consideration of the ferox trout. Experimental Gerontology 36:765-790

Mangel, M. and J. Stamps. Trade-offs between growth and mortality and the maintenance of individual variation in growth. Evolutionary Ecology Research 3:583-593

Mangel, M., Fiksen, Ø. and J. Giske. Theoretical and statistical models in natural resource management and research. Pg 57-71 in Modeling in Natural Resource Management. Development, interpretation and application. T.M. Shenk and A.B. Franklin, editors.Island Press, Washington, DC

Ludwig, D., Mangel, M., and B. Haddad. Ecology, conservation and public policy. Annual Review of Ecology and Systematics. 32:481-517

 

2002

Alonzo, S.H. and M. Mangel. Effects of social behaviour on survival and growth of krill: important, but how relevant? Marine Ecology Progress Series 244:309-310

Ellner, S.P., J. Fieberg, D. Ludwig, and C. Wilcox. 2002. Precision in population viability analysis. Conservation Biology 16:258-261

Goodman, D., Mangel, M., Parkes, G., Quinn, T., Restrepo, V., Smith, T., and K. Stokes. Scientific Review of the Harvest Strategy Currently Used in the BSAI and GOA Groundfish Fishery Management Plans. Report to the North Pacific Fishery Management Council

Metcalfe, N.B., Bull, Colin D., and M.Mangel. Seasonal variation in catch-up growth reveals state-dependent somatic allocations in salmon. Evolutionary Ecology Research 4:1-11

Mangel, M., Marinovic, B., Pomeroy, C., and D. Croll. Requiem for Ricker: Unpacking MSY. Bulletin of Marine Science 70: 763-781

Mangel, M. Environment and longevity: emergence without interaction, multiple steady states and stochastic clocks. Evolutionary Ecology Research 4:1065-1074

Rosenberg, A., Kirkwood, G., Mangel, M., Hill, S. and G. Parkes. Investigating the Accuracy and Robustness of the Icelandic Cod Assessment and Catch Control Rule. MRAG Americas, Tampa, FL

Wilcox, C. and H. Possingham. Do life history traits affect the accuracy of diffusion approximations for mean time to extinction? Ecological Applications 12:1163-1179

 

2003

Alonzo, S.H., Switzer, P.V., and M. Mangel. An ecosystem-based approach to management: using individual behaviour to predict indirect effects of Antarctic krill fisheries on penguin foraging. Journal of Applied Ecology 40:692-7

Alonzo, S.H., Switzer, P.V., and M. Mangel. Ecological games in space and time: The distribution and abundance of Antarctic krill and penguins. Ecology 84:1598-1607

Giske, J., Mangel, M., Jakobsen, P., Huse, G., Wilcox, C. and E. Strand. Explicit trade-off rules in proximate adaptive agents. Evolutionary Ecology Reseach 5:835-865

Luttbeg, B., Rowe, L. and M. Mangel. Prey state and experimental design affect relative size of trait- and density-mediated indirect effects. Ecology 84:1140-1150

Mangel, M. Environment and longevity: The demography of the growth rate. Population and Development Review 29 (Supplement):57-70

Mangel, M. Metapopulation ecology and the extinction risk of West Coast salmon populations. Pg 79-106 in MacCall, A.D. and T.C. Wainwright (editors). Assessing extinction risk for West Coast salmon. U.S. Dept. Commer. NOAA Tech Memo. NMFS NWFSC-56, 198p. (The link is to the entire report)

Mangel, M. and S.B. Munch 2003. Opportunities for Bayesian analysis in the search for sustainable fisheries. ISBA Bulletin 10:3-5.

Munch, SB., D.O. Conover, and M. Mangel 2003. Quantifying natural selection on body size from field data with an application to winter mortality in Menidia menidia. Ecology 84:2168-2177.

Munch, S.B. and D.O. Conover. 2003. Rapid growth results in increased susceptibility to predation in Menidia menidia. Evolution 57:2119-2127.

 

2004

Alonzo SH, Mangel M. 2004. Size-selective fisheries, sperm limitation and spawning per recruit in sex changing fish: California sheephead (Semicossyphus pulcher) as an illustrative example. Fishery Bulletin 102:1-13

Bonsall, M.B. and M. Mangel.2004.. Life-history trade-offs and ecological dynamics in the evolution of longevity.Proceedings of the Royal Society of London B 271:1143-1150

Cooper, A.B., Rosenberg, A.A., Stefansson, G. and M. Mangel. Examing the importance of consistency in multi-vessel trawl survey design based on the U.S. west coast groundfish bottom trawl survey. Fisheries Research 70:239-250

Dick, E.J. Beyond 'lognormal versus gamma': discrimination among error distributions for generalized linear models. Fisheries Research 70:351-366

Mangel M. and M.B. Bonsall. 2004. The shape of things to come: using models with physiological structure to predict mortality trajectories. Theoretical Population Biology 65:353-359

Munch, S.B. and D.O. Conover. 2004. Nonlinear growth cost in Menidia menidia: theory and empirical evidence. Evolution 58(3):661-664

Noren, D.P. and M. Mangel (J). 2004. Energy reserve allocation in fasting Northern Elephant Seal Pups: inter-relationships between body condition and fasting duration. Functional Ecology 18:233-242

Stephens, A. and A. MacCall. A multispecies approach to subsetting logbook data for purposes of estimating CPUE. Fisheries Research 70:299-310

Hilborn, R., Stokes, K., Maquire, J-J., Smith, T., Botsford, L.W., Mangel, M., Orensanz, J., Parma, A., Rice, J., Bell, J., Cochrane, K.L., Garcia, S., Hall, S.J., Kirkwood, G.P., Sainsbury, K., Stefansson, G., and C. Walters. 2004. When can marine reserves improve fisheries management? Ocean & Coastal Management 47: 197-205

Ish, T., Dick, E.J., Switzer, P.V. and M. Mangel. 2004. Environment, krill and squid in Monterey Bay: from fisheries to life histories and back again. Deep-Sea Research II 51:849-862

Mangel, M. Weighing the evidence. A review of M. Taper and S. Lele (editors). The Nature of Scientific Evidence. Statistical, philosophical, and empirical considerations. 2004. Science 306:1478

Pikitch, E.K., Santora, C., Babcock, E.A., Bakun, A., Bonfil, R., Conover, D.O., Dayton, P., Doukakis, P., Fluharty, D. Heneman, B., Houde, E.D., Link, J., Livingston, P.A., Mangel, M., McAllister, M.K., Pope, J. and K.J. Sainsbury. 2004. Ecosystem-based fishery management. Science 305:346-347. Also see correspondence and reply Science 306:1891-1892

Kahn, R. G., D. E. Pearson, and E. J. Dick. 2004. Comparison of standard length, fork length, and total length for measuring west coast marine fishes. Marine Fisheries Review 66(1):31-33

2005

Alonzo, S.H. and M. Mangel.Sex-change rules, stock dynamics, and the performance of spawning-per-recruit measures in protogynous stocks.  Fishery Bulletin103:229-245

Mangel, M. and P.S. Levin. Regime, phase and paradigm shifts: making community ecology the basic science for fisheries. Philosophical Transactions of the Royal Society B. 360:95-105

Naylor, R., Hindar, K., Fleming, I.A., Goldburg, R., Willims, S., Volpe, J., Whoriskey, F., Eagle, J., Kelso, D. and M. Mangel.Fugitive salmon: Assessing the risks of escaped fish from net-pen aquaculture.  BioScience 55:427-437

Conover, D.A., S.A. Arnott, M.R. Walsh, and S. B. Munch. 2005. Darwinian Fishery Science: lessons from the Atlantic silverside. Canadian Journal of Fisheries and Aquatic Sciences, 62:730-737.

Munch, S.B., M.L. Snover, G.M. Watters, and M. Mangel. 2005. A unified treatment of top-down and bottom-up control of reproduction in populations. Ecology Letters 8:691-695.

Munch, S.B. M. Walsh, and D.O. Conover. 2005. Harvest selection, genetic correlations, and recruitment: one less thing to worry about? Canadian Journal of Fisheries and Aquatic Sciences 62:802-810.

Snover, M.L., G.M. Watters, and M. Mangel. 2005. Interacting effects of behavior and oceanography on growth in salmonids with examples for coho salmon (Oncorhynchus kisutch). Canadian Journal of Fisheries and Aquatic Sciences 62:1219-1230.

Mangel, M. 2005. Invariant ratios vs. dimensional ratios. Science 310:1426-27

Mangel, M. and S.B. Munch* 2005. A life-history perspective on short- and long-term consequences of growth compensation. Am. Nat. 166 (6): E155-E176.

Munch*, S.B., T. Kottas and M. Mangel. 2005. Bayesian non-parametric analysis of stock-recruitment relationships. Can. J. Fish. Aquat. Sci., 62:1808-1821

Xavier, J. C., Croxall, J. P., and K. A. Cresswell. Boluses: an effective method for assessing the proportions of cephalopods in the diet of Albatrosses. The Auk 122(4):1182-1190, 2005.

2006

Essington, T.E. Beaudreau, A.H., and Wiedenmann, J. 2006. Fishing through marine food webs. Proc. Nat. Ac. Sci. 103: 9 3171-3175

Gardmark, A., Jonzen, N. and M. Mangel. 2006. Density-dependent body growth reduces the potential of marine reserves toi enhance yields. Journal of Applied Ecology 43:61-69

Mangel, M. 2006. Commentary: Accounting for uncertainty in marine reserve design. Ecology Letters 9:11-12

Mangel, M., Levin, P. and A. Patil. 2006. Using life history and persistence criteria to prioritize habitats for management and conservartion. Ecological Applications 16:797-806

Snover*, M.L., Watters, G.M. and M. Mangel. 2006. Top-down and bottom-up control of life history stategies in coho salmon (Oncorhynchus kisutch). American Naturalist 167:E140-E157

Walsh, M.R., S.B. Munch, S. Chiba, and D.O. Conover. 2006. Maladaptive changes in multiple traits caused by fishing: impediments to population recovery. Ecol. Lett. 9:142-148

He,X., Mangel, M. and A. MacCall. 2006. A prior for steepness in stock-recruitment relationships, based on an evolutionary persistence principle. Fishery Bulletin 104: 428-433

IN PRESS

Kahn, R. G., D. E. Pearson, and E. J. Dick. Comparison of standard length, fork length, and total length for measuring fish. Marine Fisheries Review.

Mangel, M., Levin, P.S. and A.P. Patil. Using Life History and Persistence Criteria To Prioritize Habitats for Management and Conservation. Ecological Applications

Mangel, M. and S.B. Munch A life-history perspective on short- and long-term consequences of growth compensation. American Naturalist.

Munch, S.B. T. Kottas and M. Mangel. Bayesian non-parametric analysis of stock-recruitment relationships. Canadian Journal of Fisheries and Aquatic Sciences

Snover, M.L., A.A. Hohn, L.B. Crowder, and S.S. Heppell. In Press. Age and growth in Kemp's ridley sea turtles: evidence from mark recapture and skeletochronology. In: P. Plotkin and S. Morreale (Eds.) The biology and conservation of ridley sea turtles. Washington,D.C.: Smithsonian Institute.

Shea, K., N. Wolf*, and M. Mangel. In press. Influence of density dependence on the detection of trends in unobserved life-history stages. Journal of Zoology.

K Siegfried and B. Sanso. In press Two Bayesian Methods for Estimating Parameters of the von Bertalanffy Growth Equation; Environmental Bioloigy of Fishes

Mangel, M., Kindsvatter*, H. and M. Bonsall. Submitted. Evolution of diversity and longevity in the rockfishes (Sebastes spp). Evolution

Mangel, M. and N. Wolf*. In press. Predator Diet Breadth and Prey Population Dynamics: Mechanism and Modeling. Pgs. 277-283 in J. A. Estes, R. L. Brownell, D. R. DeMaster, D. Doak, and T. M. Williams, eds. Whales, Whaling and Ocean Ecosystems. University of California Press, Berkeley, CA.

Patil, A. and S.B. Munch*. Submitted Unassuming rebuilding management. Canadian Journal of Fisheries and Aquatic Sciences

Wiedenmann, J. and T. E. Essington..in press Density dependent overwinter survival in young-of-year bluefish (Pomatomus saltatrix)?: A new approach for assessing stage-structured survival. Canadian Journal of Fisheries and Aquatic Sciences.

IN REVIEW

Hi, X., Mangel, M. and A. MacCall. A prior for steepness based on a persistence principle. Fishery Bulletin.

Kindsvater, H. and M. Mangel. A precautionary approach to managing impacts of entrainment on marine populations. Ocean and Coastal Management.

Munch, S.B., Mangel, M. and A. Kottas. Environmental regimes and density-dependence: a Bayesian modeling approach for identifying recruitment regimes. Ecology.

Snover, M.L., G.M. Watters, and M. Mangel. Top-down and bottom-up control of life history strategies in coho salmon (Oncorhynchus kisutch). American Naturalist.

Chapters in Conference Proceedings/Bulletins:

Ish. T. Simulation of Logging Road Surface Erosion on the Jackson Demonstration State Forest, Standiford, R. B., G. A. Giusti and Y. Valachovic. (eds). In press. Proceedings of the Redwood Region Forest Science Symposium. March 15 ? 17, 2004. Rohnert Park Calif. Univ. of Calif. Berkeley.

Books:

Mangel, M. The Theoretical Biologist?s Toolbox. Quantitative Methods for Ecology and Evolutionary Biology. Cambridge University Press.

Wolf, N., J. Melbourne, and M. Mangel. 2006. The method of multiple hypotheses and the decline of Steller sea lions in western Alaska. Pgs. 275-293 in I. L. Boyd, S. Wanless, and C. J. Camphuysen, eds. Top Predators in Marine Ecosystems: Their Role in Monitoring and Management (Conservation Biology 12) 2006. Cambridge University Press, Cambridge.

Technical Reports/Newsletters:

S. Alonzo, M. Key, T. Ish and A. MacCall. 2004. Status of California Sheephead (Semicossyphus pulcher) Stock 2004. California Department of Fish and Game Report.

Key, M., MacCall, A.D., Bishop, T. and B. Leos. 2005. Stock assessment of the Gopher Rockfish (Sebastes carnatus) California Department of Fish and Game Report.

Piner, K., E. Dick, and J. Field. 2005 Stock Status of Cowcod in the Southern California Bight and Future Prospects. Pacific Fishery Management Council, Portland, Oregon. May 25, 2005. 107 p.