G-Known: Integrated Genome Analysis

• Overview
• Definitions of project-specific terms
• High-level specification of the process by which a G-Known gene-finder is built and used
• Specification of the gene-finding model file format
• Topological transformations applied to G-Known models prior to processing
• Specification for the machine learning step of the G-Known process
• Specification of the data structures used to represent biological sequences
• Experiments performed using G-Known

HTML manual pages

• G-Known commands overview
• Data reading options
• Verbose flags documentation
• transform-model
• draw-model
• emit-sequence
• train-model
• parse-sequence
• predict-stats
• export-model

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William Stafford Noble, Mark Diekhans, and David Haussler

G-Known Integrated Genome Analysis

This material is based upon work supported by the National Science Foundation under Grant No. DBI-0078523.