YMR036C (MIH1) SGDID:S0004639, Chr XIII from 341855-343519, reverse complement

Images of an (incomplete) model created by sidechain replacement on the backbone of the highest scoring template.

Coloring is defined by the dssp rasmol script, to show predicted secondary structure (red for helix, yellow for strand, blue for turn, grey for other).

Front	Top	Side
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Fragment list for undertaker (from fragfinder)

YMR036C.t06.many.frag.gz

2007 May 9 19:22:53

Fragment list for undertaker (from fragfinder)

YMR036C.t04.many.frag.gz

2007 May 9 19:25:09

Fragment list for undertaker (from fragfinder)

YMR036C.t2k.many.frag.gz

2007 May 9 19:28:18

Images of complete model in decoys/YMR036C.try1-opt2.pdb.gz

Coloring is defined by the dssp rasmol script, to show predicted secondary structure (red for helix, yellow for strand, blue for turn, grey for other).

Front	Top	Side
500x500	500x500	500x500

Please cite the following papers:

• Kevin Karplus, Sol Katzman, George Shackleford, Martina Koeva, Jenny Draper, Bret Barnes, Marcia Soriano, and Richard Hughey. SAM-T04: what's new in protein-structure prediction for CASP6. Proteins: Structure, Function, and Bioinformatics, 2005. 61(S7):135-142. doi:10.1002/prot.20730
• Rachel Karchin, Melissa Cline, and Kevin Karplus. Evaluation of local structure alphabets based on residue burial. Proteins: Structure, Function, and Genetics, 55(3):508--518, 5 March 2004. doi:10.1002/prot.20008

• Rachel Karchin, Melissa Cline, Yael Mandel-Gutfreund, and Kevin Karplus. Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry. Proteins: Structure, Function, and Genetics, 51(4):504--514, June 2003. doi:10.1002/prot.10369

• Karplus, K. and Karchin, R. and Draper, J. and Casper, J. and Mandel-Gutfreund, Y. and Diekhans, M. and Hughey, R. ``Combining local-structure, fold-recognition, and new-fold methods for protein structure prediction'' Proteins: Structure Function and Genetics53(S6):491-496,15 Oct 2003 doi:10.1002/prot.10540
• Rachel Karchin, Melissa Cline, Yael Mandel-Gutfreund, and Kevin Karplus. ``Hidden Markov models that use predicted local structure for fold recognition: alphabets of backbone geometry.'' Proteins: Structure, Function, and Genetics, 51(4):504--514, June 2003. doi:10.1002/prot.10369
• Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001 doi:10.1002/prot.10021

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SAM web system designed by Kevin Karplus and Alex Williams, based on prior design by Kevin Karplus and Rachel Karchin.
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