SAM_T02 Results for YJL187C (SWE1)

YJL187C (SWE1) SGDID:S0003723, Chr X from 76802-79261, reverse complement

Description Link to file Date
Inputs
Submitted sequence(s) YJL187C.a2m 2002 Nov 16 18:06:26
README file README 2007 May 10 10:06:40
Quick blastp of non-redundant PDB YJL187C.pdb.blast 2007 Mar 10 12:57:56
Multiple alignment
SAM_t06 multiple alignment in a2m format YJL187C.t06.a2m.gz 2007 May 9 18:28:15
SAM_t06 multiple alignment in pretty html format YJL187C.t06.pa.html 2007 May 10 10:10:07
SAM_t06 target hidden Markov model YJL187C.t06.w0.5.mod 2007 May 9 18:30:25
SAM_t06 multiple alignment---sequence logo (eps format) (pdf format) YJL187C.t06.w0.5-logo 2007 May 9 18:35:02
Script for highlighting in rasmol conserved_t06 2007 May 9 18:35:03
SAM_t04 multiple alignment in a2m format YJL187C.t04.a2m.gz 2007 May 9 19:55:39
SAM_t04 multiple alignment in pretty html format YJL187C.t04.pa.html 2007 May 9 19:56:27
SAM_t04 target hidden Markov model YJL187C.t04.w0.5.mod 2007 May 9 19:56:31
SAM_t04 multiple alignment---sequence logo (eps format) (pdf format) YJL187C.t04.w0.5-logo 2007 May 9 19:56:41
Script for highlighting in rasmol conserved_t04 2007 May 9 19:56:41
SAM_t2k multiple alignment in a2m format YJL187C.t2k.a2m.gz 2007 May 9 23:59:47
SAM_t2k multiple alignment in pretty html format YJL187C.t2k.pa.html 2007 May 10 0:02:25
SAM_t2k target hidden Markov model YJL187C.t2k.w0.5.mod 2007 May 10 0:02:50
SAM_t2k multiple alignment---sequence logo (eps format) (pdf format) YJL187C.t2k.w0.5-logo 2007 May 10 0:03:37
Script for highlighting in rasmol conserved_t2k 2007 May 10 0:03:38
Secondary Structure Prediction (Explanation of secondary-structure predictions)
str2 structure prediction (rdb format) (seq format) YJL187C.t06.str2 2007 May 9 18:35:00
Script for YJL187C.t06.str2 coloring in rasmol YJL187C.t06.str2-color.rasmol 2007 May 10 0:03:45
str2---sequence logo (eps format) (pdf format) YJL187C.t06.str2-logo 2007 May 10 0:03:48
str2 structure prediction (rdb format) (seq format) YJL187C.t04.str2 2007 May 9 19:56:38
Script for YJL187C.t04.str2 coloring in rasmol YJL187C.t04.str2-color.rasmol 2007 May 10 0:03:50
str2---sequence logo (eps format) (pdf format) YJL187C.t04.str2-logo 2007 May 10 0:03:53
str2 structure prediction (rdb format) (seq format) YJL187C.t2k.str2 2007 May 10 0:03:35
Script for YJL187C.t2k.str2 coloring in rasmol YJL187C.t2k.str2-color.rasmol 2007 May 10 0:03:54
str2---sequence logo (eps format) (pdf format) YJL187C.t2k.str2-logo 2007 May 10 0:03:57
stride-ebghtl structure prediction (rdb format) (seq format) YJL187C.t06.stride-ebghtl 2007 May 10 0:04:28
Script for YJL187C.t06.stride-ebghtl coloring in rasmol YJL187C.t06.stride-ebghtl-color.rasmol 2007 May 10 0:04:28
stride-ebghtl---sequence logo (eps format) (pdf format) YJL187C.t06.stride-ebghtl-logo 2007 May 10 0:04:31
stride-ebghtl structure prediction (rdb format) (seq format) YJL187C.t04.stride-ebghtl 2007 May 10 0:04:36
Script for YJL187C.t04.stride-ebghtl coloring in rasmol YJL187C.t04.stride-ebghtl-color.rasmol 2007 May 10 0:04:36
stride-ebghtl---sequence logo (eps format) (pdf format) YJL187C.t04.stride-ebghtl-logo 2007 May 10 0:04:39
stride-ebghtl structure prediction (rdb format) (seq format) YJL187C.t2k.stride-ebghtl 2007 May 10 0:04:42
Script for YJL187C.t2k.stride-ebghtl coloring in rasmol YJL187C.t2k.stride-ebghtl-color.rasmol 2007 May 10 0:04:42
stride-ebghtl---sequence logo (eps format) (pdf format) YJL187C.t2k.stride-ebghtl-logo 2007 May 10 0:04:45
dssp-ebghstl structure prediction (rdb format) (seq format) YJL187C.t06.dssp-ebghstl 2007 May 10 0:05:15
Script for YJL187C.t06.dssp-ebghstl coloring in rasmol YJL187C.t06.dssp-ebghstl-color.rasmol 2007 May 10 0:05:15
dssp-ebghstl---sequence logo (eps format) (pdf format) YJL187C.t06.dssp-ebghstl-logo 2007 May 10 0:05:18
dssp-ebghstl structure prediction (rdb format) (seq format) YJL187C.t04.dssp-ebghstl 2007 May 10 0:05:23
Script for YJL187C.t04.dssp-ebghstl coloring in rasmol YJL187C.t04.dssp-ebghstl-color.rasmol 2007 May 10 0:05:23
dssp-ebghstl---sequence logo (eps format) (pdf format) YJL187C.t04.dssp-ebghstl-logo 2007 May 10 0:05:26
dssp-ebghstl structure prediction (rdb format) (seq format) YJL187C.t2k.dssp-ebghstl 2007 May 10 0:05:29
Script for YJL187C.t2k.dssp-ebghstl coloring in rasmol YJL187C.t2k.dssp-ebghstl-color.rasmol 2007 May 10 0:05:29
dssp-ebghstl---sequence logo (eps format) (pdf format) YJL187C.t2k.dssp-ebghstl-logo 2007 May 10 0:05:32
alpha structure prediction (rdb format) (seq format) YJL187C.t06.alpha 2007 May 10 0:06:02
Script for YJL187C.t06.alpha coloring in rasmol YJL187C.t06.alpha-color.rasmol 2007 May 10 0:06:02
alpha---sequence logo (eps format) (pdf format) YJL187C.t06.alpha-logo 2007 May 10 0:06:05
alpha structure prediction (rdb format) (seq format) YJL187C.t04.alpha 2007 May 10 0:06:09
Script for YJL187C.t04.alpha coloring in rasmol YJL187C.t04.alpha-color.rasmol 2007 May 10 0:06:09
alpha---sequence logo (eps format) (pdf format) YJL187C.t04.alpha-logo 2007 May 10 0:06:12
alpha structure prediction (rdb format) (seq format) YJL187C.t2k.alpha 2007 May 10 0:06:16
Script for YJL187C.t2k.alpha coloring in rasmol YJL187C.t2k.alpha-color.rasmol 2007 May 10 0:06:16
alpha---sequence logo (eps format) (pdf format) YJL187C.t2k.alpha-logo 2007 May 10 0:06:19
bys structure prediction (rdb format) (seq format) YJL187C.t06.bys 2007 May 10 0:06:48
Script for YJL187C.t06.bys coloring in rasmol YJL187C.t06.bys-color.rasmol 2007 May 10 0:06:48
bys---sequence logo (eps format) (pdf format) YJL187C.t06.bys-logo 2007 May 10 0:06:52
bys structure prediction (rdb format) (seq format) YJL187C.t04.bys 2007 May 10 0:06:55
Script for YJL187C.t04.bys coloring in rasmol YJL187C.t04.bys-color.rasmol 2007 May 10 0:06:55
bys---sequence logo (eps format) (pdf format) YJL187C.t04.bys-logo 2007 May 10 0:06:58
bys structure prediction (rdb format) (seq format) YJL187C.t2k.bys 2007 May 10 0:07:09
Script for YJL187C.t2k.bys coloring in rasmol YJL187C.t2k.bys-color.rasmol 2007 May 10 0:07:09
bys---sequence logo (eps format) (pdf format) YJL187C.t2k.bys-logo 2007 May 10 0:07:12
dssp-ehl2 structure prediction (rdb format) (seq format) YJL187C.t06.dssp-ehl2 2007 May 10 0:07:15
Script for YJL187C.t06.dssp-ehl2 coloring in rasmol YJL187C.t06.dssp-ehl2-color.rasmol 2007 May 10 0:07:15
dssp-ehl2---sequence logo (eps format) (pdf format) YJL187C.t06.dssp-ehl2-logo 2007 May 10 0:07:17
dssp-ehl2 structure prediction (rdb format) (seq format) YJL187C.t04.dssp-ehl2 2007 May 10 0:07:18
Script for YJL187C.t04.dssp-ehl2 coloring in rasmol YJL187C.t04.dssp-ehl2-color.rasmol 2007 May 10 0:07:18
dssp-ehl2---sequence logo (eps format) (pdf format) YJL187C.t04.dssp-ehl2-logo 2007 May 10 0:07:21
dssp-ehl2 structure prediction (rdb format) (seq format) YJL187C.t2k.dssp-ehl2 2007 May 10 0:07:22
Script for YJL187C.t2k.dssp-ehl2 coloring in rasmol YJL187C.t2k.dssp-ehl2-color.rasmol 2007 May 10 0:07:22
dssp-ehl2---sequence logo (eps format) (pdf format) YJL187C.t2k.dssp-ehl2-logo 2007 May 10 0:07:24
n_notor2 structure prediction (rdb format) (seq format) YJL187C.t06.n_notor2 2007 May 10 0:07:55
Script for YJL187C.t06.n_notor2 coloring in rasmol YJL187C.t06.n_notor2-color.rasmol 2007 May 10 0:07:55
n_notor2---sequence logo (eps format) (pdf format) YJL187C.t06.n_notor2-logo 2007 May 10 0:07:58
n_notor2 structure prediction (rdb format) (seq format) YJL187C.t04.n_notor2 2007 May 10 0:08:01
Script for YJL187C.t04.n_notor2 coloring in rasmol YJL187C.t04.n_notor2-color.rasmol 2007 May 10 0:08:01
n_notor2---sequence logo (eps format) (pdf format) YJL187C.t04.n_notor2-logo 2007 May 10 0:08:04
n_notor2 structure prediction (rdb format) (seq format) YJL187C.t2k.n_notor2 2007 May 10 0:08:15
Script for YJL187C.t2k.n_notor2 coloring in rasmol YJL187C.t2k.n_notor2-color.rasmol 2007 May 10 0:08:15
n_notor2---sequence logo (eps format) (pdf format) YJL187C.t2k.n_notor2-logo 2007 May 10 0:08:18
o_notor2 structure prediction (rdb format) (seq format) YJL187C.t06.o_notor2 2007 May 10 0:08:50
Script for YJL187C.t06.o_notor2 coloring in rasmol YJL187C.t06.o_notor2-color.rasmol 2007 May 10 0:08:50
o_notor2---sequence logo (eps format) (pdf format) YJL187C.t06.o_notor2-logo 2007 May 10 0:08:53
o_notor2 structure prediction (rdb format) (seq format) YJL187C.t04.o_notor2 2007 May 10 0:08:56
Script for YJL187C.t04.o_notor2 coloring in rasmol YJL187C.t04.o_notor2-color.rasmol 2007 May 10 0:08:56
o_notor2---sequence logo (eps format) (pdf format) YJL187C.t04.o_notor2-logo 2007 May 10 0:08:59
o_notor2 structure prediction (rdb format) (seq format) YJL187C.t2k.o_notor2 2007 May 10 0:09:10
Script for YJL187C.t2k.o_notor2 coloring in rasmol YJL187C.t2k.o_notor2-color.rasmol 2007 May 10 0:09:10
o_notor2---sequence logo (eps format) (pdf format) YJL187C.t2k.o_notor2-logo 2007 May 10 0:09:13
n_sep structure prediction (rdb format) (seq format) YJL187C.t06.n_sep 2007 May 10 0:09:43
Script for YJL187C.t06.n_sep coloring in rasmol YJL187C.t06.n_sep-color.rasmol 2007 May 10 0:09:43
n_sep---sequence logo (eps format) (pdf format) YJL187C.t06.n_sep-logo 2007 May 10 0:09:46
n_sep structure prediction (rdb format) (seq format) YJL187C.t04.n_sep 2007 May 10 0:09:51
Script for YJL187C.t04.n_sep coloring in rasmol YJL187C.t04.n_sep-color.rasmol 2007 May 10 0:09:51
n_sep---sequence logo (eps format) (pdf format) YJL187C.t04.n_sep-logo 2007 May 10 0:09:54
n_sep structure prediction (rdb format) (seq format) YJL187C.t2k.n_sep 2007 May 10 0:10:05
Script for YJL187C.t2k.n_sep coloring in rasmol YJL187C.t2k.n_sep-color.rasmol 2007 May 10 0:10:05
n_sep---sequence logo (eps format) (pdf format) YJL187C.t2k.n_sep-logo 2007 May 10 0:10:08
o_sep structure prediction (rdb format) (seq format) YJL187C.t06.o_sep 2007 May 10 0:10:38
Script for YJL187C.t06.o_sep coloring in rasmol YJL187C.t06.o_sep-color.rasmol 2007 May 10 0:10:38
o_sep---sequence logo (eps format) (pdf format) YJL187C.t06.o_sep-logo 2007 May 10 0:10:42
o_sep structure prediction (rdb format) (seq format) YJL187C.t04.o_sep 2007 May 10 0:10:45
Script for YJL187C.t04.o_sep coloring in rasmol YJL187C.t04.o_sep-color.rasmol 2007 May 10 0:10:45
o_sep---sequence logo (eps format) (pdf format) YJL187C.t04.o_sep-logo 2007 May 10 0:10:48
o_sep structure prediction (rdb format) (seq format) YJL187C.t2k.o_sep 2007 May 10 0:11:00
Script for YJL187C.t2k.o_sep coloring in rasmol YJL187C.t2k.o_sep-color.rasmol 2007 May 10 0:11:01
o_sep---sequence logo (eps format) (pdf format) YJL187C.t2k.o_sep-logo 2007 May 10 0:11:04
dssp-ehl2 structure prediction (rdb format) (seq format) YJL187C.dssp-ehl2 2007 May 10 0:11:05
Script for YJL187C.dssp-ehl2 coloring in rasmol YJL187C.dssp-ehl2-color.rasmol 2007 May 10 0:11:05
dssp-ehl2---sequence logo (eps format) (pdf format) YJL187C.dssp-ehl2-logo 2007 May 10 0:11:08
CB_burial_14_7 structure prediction (rdb format) (seq format) YJL187C.t06.CB_burial_14_7 2007 May 10 0:11:38
Script for YJL187C.t06.CB_burial_14_7 coloring in rasmol YJL187C.t06.CB_burial_14_7-color.rasmol 2007 May 10 0:11:38
CB_burial_14_7---sequence logo (eps format) (pdf format) YJL187C.t06.CB_burial_14_7-logo 2007 May 10 0:11:41
CB_burial_14_7 structure prediction (rdb format) (seq format) YJL187C.t04.CB_burial_14_7 2007 May 10 0:11:44
Script for YJL187C.t04.CB_burial_14_7 coloring in rasmol YJL187C.t04.CB_burial_14_7-color.rasmol 2007 May 10 0:11:44
CB_burial_14_7---sequence logo (eps format) (pdf format) YJL187C.t04.CB_burial_14_7-logo 2007 May 10 0:11:47
CB_burial_14_7 structure prediction (rdb format) (seq format) YJL187C.t2k.CB_burial_14_7 2007 May 10 0:11:50
Script for YJL187C.t2k.CB_burial_14_7 coloring in rasmol YJL187C.t2k.CB_burial_14_7-color.rasmol 2007 May 10 0:11:50
CB_burial_14_7---sequence logo (eps format) (pdf format) YJL187C.t2k.CB_burial_14_7-logo 2007 May 10 0:11:53
near-backbone-11 structure prediction (rdb format) (seq format) YJL187C.t06.near-backbone-11 2007 May 10 0:12:24
Script for YJL187C.t06.near-backbone-11 coloring in rasmol YJL187C.t06.near-backbone-11-color.rasmol 2007 May 10 0:12:24
near-backbone-11---sequence logo (eps format) (pdf format) YJL187C.t06.near-backbone-11-logo 2007 May 10 0:12:27
near-backbone-11 structure prediction (rdb format) (seq format) YJL187C.t04.near-backbone-11 2007 May 10 0:12:30
Script for YJL187C.t04.near-backbone-11 coloring in rasmol YJL187C.t04.near-backbone-11-color.rasmol 2007 May 10 0:12:30
near-backbone-11---sequence logo (eps format) (pdf format) YJL187C.t04.near-backbone-11-logo 2007 May 10 0:12:33
near-backbone-11 structure prediction (rdb format) (seq format) YJL187C.t2k.near-backbone-11 2007 May 10 0:12:44
Script for YJL187C.t2k.near-backbone-11 coloring in rasmol YJL187C.t2k.near-backbone-11-color.rasmol 2007 May 10 0:12:44
near-backbone-11---sequence logo (eps format) (pdf format) YJL187C.t2k.near-backbone-11-logo 2007 May 10 0:12:47
Target model scores
amino acid single-track target model scores of PDB YJL187C.t06-w0.5-scores.html 2007 May 10 10:10:39
amino acid single-track target model scores of PDB YJL187C.t04-w0.5-scores.html 2007 May 10 10:10:40
amino acid single-track target model scores of PDB YJL187C.t2k-w0.5-scores.html 2007 May 10 10:10:40
amino acid/100-30-str2 multi-track target model scores YJL187C.t06-100-30-str2-scores.html 2007 May 10 1:07:56
amino acid/100-30-stride-ebghtl multi-track target model scores YJL187C.t06-100-30-stride-ebghtl-scores.html 2007 May 10 1:12:42
amino acid/100-30-dssp-ebghstl multi-track target model scores YJL187C.t06-100-30-dssp-ebghstl-scores.html 2007 May 10 1:17:31
amino acid/100-30-alpha multi-track target model scores YJL187C.t06-100-30-alpha-scores.html 2007 May 10 1:22:19
amino acid/100-30-bys multi-track target model scores YJL187C.t06-100-30-bys-scores.html 2007 May 10 1:27:08
amino acid/100-30-dssp-ehl2 multi-track target model scores YJL187C.t06-100-30-dssp-ehl2-scores.html 2007 May 10 1:31:56
amino acid/100-30-n_notor2 multi-track target model scores YJL187C.t06-100-30-n_notor2-scores.html 2007 May 10 1:36:41
amino acid/100-30-o_notor2 multi-track target model scores YJL187C.t06-100-30-o_notor2-scores.html 2007 May 10 1:41:29
amino acid/100-30-n_sep multi-track target model scores YJL187C.t06-100-30-n_sep-scores.html 2007 May 10 1:46:17
amino acid/100-30-o_sep multi-track target model scores YJL187C.t06-100-30-o_sep-scores.html 2007 May 10 1:51:05
amino acid/100-30-CB_burial_14_7 multi-track target model scores YJL187C.t06-100-30-CB_burial_14_7-scores.html 2007 May 10 1:55:53
amino acid/100-30-near-backbone-11 multi-track target model scores YJL187C.t06-100-30-near-backbone-11-scores.html 2007 May 10 2:00:43
amino acid/100-40-40-str2+CB_burial_14_7 multi-track target model scores YJL187C.t06-100-40-40-str2+CB_burial_14_7-scores.html 2007 May 10 2:05:52
amino acid/80-60-80-str2+near-backbone-11 multi-track target model scores YJL187C.t06-80-60-80-str2+near-backbone-11-scores.html 2007 May 10 2:11:01
amino acid/100-30-str2 multi-track target model scores YJL187C.t04-100-30-str2-scores.html 2007 May 10 2:17:13
amino acid/100-30-stride-ebghtl multi-track target model scores YJL187C.t04-100-30-stride-ebghtl-scores.html 2007 May 10 2:23:20
amino acid/100-30-dssp-ebghstl multi-track target model scores YJL187C.t04-100-30-dssp-ebghstl-scores.html 2007 May 10 2:29:29
amino acid/100-30-alpha multi-track target model scores YJL187C.t04-100-30-alpha-scores.html 2007 May 10 2:35:38
amino acid/100-30-bys multi-track target model scores YJL187C.t04-100-30-bys-scores.html 2007 May 10 2:41:48
amino acid/100-30-dssp-ehl2 multi-track target model scores YJL187C.t04-100-30-dssp-ehl2-scores.html 2007 May 10 2:47:57
amino acid/100-30-n_notor2 multi-track target model scores YJL187C.t04-100-30-n_notor2-scores.html 2007 May 10 2:54:04
amino acid/100-30-o_notor2 multi-track target model scores YJL187C.t04-100-30-o_notor2-scores.html 2007 May 10 3:00:13
amino acid/100-30-n_sep multi-track target model scores YJL187C.t04-100-30-n_sep-scores.html 2007 May 10 3:06:22
amino acid/100-30-o_sep multi-track target model scores YJL187C.t04-100-30-o_sep-scores.html 2007 May 10 3:12:35
amino acid/100-30-CB_burial_14_7 multi-track target model scores YJL187C.t04-100-30-CB_burial_14_7-scores.html 2007 May 10 3:19:25
amino acid/100-30-near-backbone-11 multi-track target model scores YJL187C.t04-100-30-near-backbone-11-scores.html 2007 May 10 3:26:11
amino acid/100-40-40-str2+CB_burial_14_7 multi-track target model scores YJL187C.t04-100-40-40-str2+CB_burial_14_7-scores.html 2007 May 10 3:32:48
amino acid/80-60-80-str2+near-backbone-11 multi-track target model scores YJL187C.t04-80-60-80-str2+near-backbone-11-scores.html 2007 May 10 3:39:23
amino acid/100-30-str2 multi-track target model scores YJL187C.t2k-100-30-str2-scores.html 2007 May 10 3:47:24
amino acid/100-30-stride-ebghtl multi-track target model scores YJL187C.t2k-100-30-stride-ebghtl-scores.html 2007 May 10 3:55:20
amino acid/100-30-dssp-ebghstl multi-track target model scores YJL187C.t2k-100-30-dssp-ebghstl-scores.html 2007 May 10 4:03:16
amino acid/100-30-alpha multi-track target model scores YJL187C.t2k-100-30-alpha-scores.html 2007 May 10 4:11:17
amino acid/100-30-bys multi-track target model scores YJL187C.t2k-100-30-bys-scores.html 2007 May 10 4:19:18
amino acid/100-30-dssp-ehl2 multi-track target model scores YJL187C.t2k-100-30-dssp-ehl2-scores.html 2007 May 10 4:27:16
amino acid/100-30-n_notor2 multi-track target model scores YJL187C.t2k-100-30-n_notor2-scores.html 2007 May 10 4:35:07
amino acid/100-30-o_notor2 multi-track target model scores YJL187C.t2k-100-30-o_notor2-scores.html 2007 May 10 4:43:08
amino acid/100-30-n_sep multi-track target model scores YJL187C.t2k-100-30-n_sep-scores.html 2007 May 10 4:51:10
amino acid/100-30-o_sep multi-track target model scores YJL187C.t2k-100-30-o_sep-scores.html 2007 May 10 4:59:11
amino acid/100-30-CB_burial_14_7 multi-track target model scores YJL187C.t2k-100-30-CB_burial_14_7-scores.html 2007 May 10 5:07:12
amino acid/100-30-near-backbone-11 multi-track target model scores YJL187C.t2k-100-30-near-backbone-11-scores.html 2007 May 10 5:15:17
amino acid/100-40-40-str2+CB_burial_14_7 multi-track target model scores YJL187C.t2k-100-40-40-str2+CB_burial_14_7-scores.html 2007 May 10 5:23:47
amino acid/80-60-80-str2+near-backbone-11 multi-track target model scores YJL187C.t2k-80-60-80-str2+near-backbone-11-scores.html 2007 May 10 5:32:19
Template model scores
Annotated t06 template model scores YJL187C.t06-template-lib-scores.html 2007 May 10 5:45:22
Annotated t04 template model scores YJL187C.t04-template-lib-scores.html 2007 May 10 5:59:43
Annotated t2k template model scores YJL187C.t2k-template-lib-scores.html 2007 May 10 6:16:06
Top Hits
Best scoring hits from t06 HMMs YJL187C.t06.best-scores.html 2007 May 10 6:27:40
Best scoring hits from t04 HMMs YJL187C.t04.best-scores.html 2007 May 10 6:38:56
Best scoring hits from t2k HMMs YJL187C.t2k.best-scores.html 2007 May 10 6:50:19
Best scoring hits from combining t06 t04 t2k YJL187C.best-scores.html 2007 May 10 6:50:22
Alignments for Top Hits
Top alignments from t06 hits YJL187C.t06.top_reported_alignments.html 2007 May 10 10:39:54
Top alignments from t04 hits YJL187C.t04.top_reported_alignments.html 2007 May 10 10:40:10
Top alignments from t2k hits YJL187C.t2k.top_reported_alignments.html 2007 May 10 10:40:25
Top alignments from combined hits YJL187C.top_reported_alignments.html 2007 May 10 7:44:20
multiple alignment of templates (a2m.gz format) (pa format) all-align 2007 May 10 7:46:59
Undertaker (3d) files
Undertaker input for top t06 alignments YJL187C.t06.undertaker-align.under 2007 May 10 10:40:27
Undertaker input for top t04 alignments YJL187C.t04.undertaker-align.under 2007 May 10 10:40:27
Undertaker input for top t2k alignments YJL187C.t2k.undertaker-align.under 2007 May 10 10:40:27
Undertaker input for top combined alignments YJL187C.undertaker-align.under 2007 May 10 7:48:58
PDB file with model(s) for top alignments YJL187C.undertaker-align.pdb.gz 2007 May 10 7:50:23

Images of an (incomplete) model created by sidechain replacement on the backbone of the highest scoring template.

Coloring is defined by the dssp rasmol script, to show predicted secondary structure (red for helix, yellow for strand, blue for turn, grey for other).

Front Top Side
500x500 500x500 500x500
Fragment list for undertaker (from fragfinder) YJL187C.t06.many.frag.gz 2007 May 10 7:53:16
Fragment list for undertaker (from fragfinder) YJL187C.t04.many.frag.gz 2007 May 10 7:56:04
Fragment list for undertaker (from fragfinder) YJL187C.t2k.many.frag.gz 2007 May 10 7:58:48

Contact predictions, based on
contact predictions (rr format) (rr.constraints format) YJL187C.449a_45 2007 May 10 8:01:17

Please cite the following papers:

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SAM web system designed by Kevin Karplus and Alex Williams, based on prior design by Kevin Karplus and Rachel Karchin.
Maintained by Kevin Karplus:

karplus@soe.ucsc.edu
First attempted model using undertaker decoys/YJL187C.try1-opt2.pdb.gz 2007 May 11 13:18:47

Images of complete model in decoys/YJL187C.try1-opt2.pdb.gz

Coloring is defined by the dssp rasmol script, to show predicted secondary structure (red for helix, yellow for strand, blue for turn, grey for other).

Front Top Side
500x500 500x500 500x500

Please cite the following papers:

This page has finished loading, and your query has now been completely processed.

SAM web system designed by Kevin Karplus and Alex Williams, based on prior design by Kevin Karplus and Rachel Karchin.
Maintained by Kevin Karplus:

karplus@soe.ucsc.edu