# converted from rr file by 'rr2constraints.py'
# Thu Jul 10 15:24:31 2008
# parameters:
#    nonbonus: 0.010000*sequencelen
# topfraction: 0.750000*sequencelen
# topdistance: 9.9
# lowdistance: 7.0
#
Constraint S27.CB I46.CB -999 7.0 9.9 0.994757 
Constraint I46.CB T115.CB -999 7.0 9.9 0.993309 
Constraint I46.CB I86.CB -999 7.0 9.9 0.989589 bonus
Constraint S27.CB L47.CB -999 7.0 9.9 0.987101 bonus
Constraint A158.CB C186.CB -999 7.0 9.9 0.982914 bonus
Constraint C186.CB V210.CB -999 7.0 9.9 0.983475 bonus
Constraint V210.CB V228.CB -999 7.0 9.9 0.982713 bonus
Constraint V210.CB V231.CB -999 7.0 9.9 0.983166 bonus
Constraint V210.CB V230.CB -999 7.0 9.9 0.981322 bonus
Constraint L47.CB T115.CB -999 7.0 9.9 0.979618 bonus
Constraint G48.CA D88.CB -999 7.0 9.9 0.980060 bonus
Constraint G184.CA V228.CB -999 7.0 9.9 0.978215 bonus
Constraint A26.CB L47.CB -999 7.0 9.9 0.976486 bonus
Constraint L47.CB D88.CB -999 7.0 9.9 0.976750 bonus
Constraint T115.CB I157.CB -999 7.0 9.9 0.976610 bonus
Constraint I86.CB T115.CB -999 7.0 9.9 0.975522 bonus
Constraint A26.CB I46.CB -999 7.0 9.9 0.974316 bonus
Constraint T174.CB G184.CA -999 7.0 9.9 0.975285 bonus
Constraint I86.CB L114.CB -999 7.0 9.9 0.973721 bonus
Constraint S27.CB T115.CB -999 7.0 9.9 0.972671 bonus
Constraint I46.CB D88.CB -999 7.0 9.9 0.972904 bonus
Constraint A87.CB L114.CB -999 7.0 9.9 0.972888 bonus
Constraint T155.CB D183.CB -999 7.0 9.9 0.973338 bonus
Constraint S27.CB G48.CA -999 7.0 9.9 0.971430 bonus
Constraint G45.CA V85.CB -999 7.0 9.9 0.970396 bonus
Constraint I46.CB C186.CB -999 7.0 9.9 0.970490 bonus
Constraint I86.CB I111.CB -999 7.0 9.9 0.970511 bonus
Constraint D88.CB E117.CB -999 7.0 9.9 0.971075 bonus
Constraint T115.CB C186.CB -999 7.0 9.9 0.972039 bonus
Constraint I156.CB G184.CA -999 7.0 9.9 0.970423 bonus
Constraint T25.CB I46.CB -999 7.0 9.9 0.969180 bonus
Constraint S27.CB S50.CB -999 7.0 9.9 0.968943 bonus
Constraint I86.CB G184.CA -999 7.0 9.9 0.967981 bonus
Constraint A158.CB I185.CB -999 7.0 9.9 0.967533 bonus
Constraint A158.CB L187.CB -999 7.0 9.9 0.966591 bonus
Constraint V28.CB G49.CA -999 7.0 9.9 0.963893 bonus
Constraint L47.CB A89.CB -999 7.0 9.9 0.964157 bonus
Constraint G49.CA D88.CB -999 7.0 9.9 0.964431 bonus
Constraint V85.CB I111.CB -999 7.0 9.9 0.964791 bonus
Constraint L114.CB L132.CB -999 7.0 9.9 0.965336 bonus
Constraint L187.CB V210.CB -999 7.0 9.9 0.965211 bonus
Constraint G45.CA I86.CB -999 7.0 9.9 0.962716 bonus
Constraint P84.CB D183.CB -999 7.0 9.9 0.963406 bonus
Constraint A112.CB D183.CB -999 7.0 9.9 0.963818 bonus
Constraint V85.CB G184.CA -999 7.0 9.9 0.962190 bonus
Constraint A113.CB D183.CB -999 7.0 9.9 0.962611 bonus
Constraint I157.CB C186.CB -999 7.0 9.9 0.962850 bonus
Constraint V188.CB V210.CB -999 7.0 9.9 0.962845 bonus
Constraint L207.CB V228.CB -999 7.0 9.9 0.962715 bonus
Constraint I46.CB A87.CB -999 7.0 9.9 0.960679 bonus
Constraint V85.CB A113.CB -999 7.0 9.9 0.960705 bonus
Constraint V85.CB A182.CB -999 7.0 9.9 0.961110 bonus
Constraint I157.CB V230.CB -999 7.0 9.9 0.960405 bonus
Constraint C186.CB M208.CB -999 7.0 9.9 0.960421 bonus
Constraint I156.CB A182.CB -999 7.0 9.9 0.958250 bonus
Constraint C186.CB L209.CB -999 7.0 9.9 0.958913 bonus
Constraint T25.CB L47.CB -999 7.0 9.9 0.957228 bonus
Constraint C44.CB P84.CB -999 7.0 9.9 0.956851 bonus
Constraint I86.CB I157.CB -999 7.0 9.9 0.957755 bonus
Constraint I157.CB D183.CB -999 7.0 9.9 0.957811 bonus
Constraint L207.CB R229.CB -999 7.0 9.9 0.958659 bonus
Constraint C44.CB I86.CB -999 7.0 9.9 0.955194 bonus
Constraint V28.CB L47.CB -999 7.0 9.9 0.953756 bonus
Constraint I86.CB A182.CB -999 7.0 9.9 0.954546 bonus
Constraint C186.CB L207.CB -999 7.0 9.9 0.953889 bonus
Constraint C186.CB V231.CB -999 7.0 9.9 0.953837 bonus
Constraint V188.CB Y212.CB -999 7.0 9.9 0.954552 bonus
Constraint Y212.CB R222.CB -999 7.0 9.9 0.953770 bonus
Constraint S27.CB G49.CA -999 7.0 9.9 0.951670 bonus
Constraint I46.CB I157.CB -999 7.0 9.9 0.952176 bonus
Constraint P84.CB A112.CB -999 7.0 9.9 0.951023 bonus
Constraint V103.CB A113.CB -999 7.0 9.9 0.951980 bonus
Constraint I157.CB V210.CB -999 7.0 9.9 0.947869 bonus
Constraint D183.CB V228.CB -999 7.0 9.9 0.948303 bonus
Constraint I185.CB L209.CB -999 7.0 9.9 0.949027 bonus
Constraint L187.CB L196.CB -999 7.0 9.9 0.949805 bonus
Constraint V188.CB G213.CA -999 7.0 9.9 0.950566 bonus
Constraint L207.CB V230.CB -999 7.0 9.9 0.950355 bonus
Constraint S27.CB A89.CB -999 7.0 9.9 0.947524 bonus
Constraint F29.CB V51.CB -999 7.0 9.9 0.947754 bonus
Constraint C44.CB V85.CB -999 7.0 9.9 0.947572 bonus
Constraint C44.CB A182.CB -999 7.0 9.9 0.948227 bonus
Constraint I46.CB A89.CB -999 7.0 9.9 0.947437 bonus
Constraint A26.CB F42.CB -999 7.0 9.9 0.945276 bonus
Constraint L47.CB A87.CB -999 7.0 9.9 0.946212 bonus
Constraint A113.CB A182.CB -999 7.0 9.9 0.946505 bonus
Constraint S50.CB D88.CB -999 7.0 9.9 0.944845 bonus
Constraint H91.CB T115.CB -999 7.0 9.9 0.944135 bonus
Constraint L114.CB G184.CA -999 7.0 9.9 0.944901 bonus
Constraint T174.CB I185.CB -999 7.0 9.9 0.944993 bonus
Constraint D183.CB V230.CB -999 7.0 9.9 0.945826 bonus
Constraint C22.CB F42.CB -999 7.0 9.9 0.943342 bonus
Constraint I46.CB V188.CB -999 7.0 9.9 0.943739 bonus
Constraint A158.CB V170.CB -999 7.0 9.9 0.942378 bonus
Constraint A158.CB A182.CB -999 7.0 9.9 0.943225 bonus
Constraint V188.CB T211.CB -999 7.0 9.9 0.943126 bonus
Constraint Y23.CB F42.CB -999 7.0 9.9 0.941035 bonus
Constraint S50.CB I65.CB -999 7.0 9.9 0.941073 bonus
Constraint H24.CB F42.CB -999 7.0 9.9 0.939752 bonus
Constraint V28.CB I46.CB -999 7.0 9.9 0.940413 bonus
Constraint V28.CB V51.CB -999 7.0 9.9 0.939921 bonus
Constraint V28.CB D88.CB -999 7.0 9.9 0.940244 bonus
Constraint L47.CB V188.CB -999 7.0 9.9 0.939937 bonus
Constraint I156.CB I185.CB -999 7.0 9.9 0.940836 bonus
Constraint M208.CB V228.CB -999 7.0 9.9 0.940297 bonus
Constraint A113.CB L132.CB -999 7.0 9.9 0.938824 bonus
Constraint A158.CB V210.CB -999 7.0 9.9 0.938998 bonus
Constraint S27.CB D88.CB -999 7.0 9.9 0.936961 bonus
Constraint D88.CB T115.CB -999 7.0 9.9 0.936741 bonus
Constraint D88.CB I116.CB -999 7.0 9.9 0.937706 bonus
Constraint I185.CB V210.CB -999 7.0 9.9 0.938621 bonus
Constraint A89.CB T115.CB -999 7.0 9.9 0.937548 bonus
Constraint I157.CB L187.CB -999 7.0 9.9 0.937144 bonus
Constraint G184.CA V230.CB -999 7.0 9.9 0.936618 bonus
Constraint C186.CB Y212.CB -999 7.0 9.9 0.936793 bonus
Constraint C186.CB V230.CB -999 7.0 9.9 0.937349 bonus
Constraint F29.CB S50.CB -999 7.0 9.9 0.935258 bonus
Constraint L47.CB I157.CB -999 7.0 9.9 0.935366 bonus
Constraint G49.CA A89.CB -999 7.0 9.9 0.935570 bonus
Constraint I185.CB I199.CB -999 7.0 9.9 0.934928 bonus
Constraint I185.CB L207.CB -999 7.0 9.9 0.935347 bonus
Constraint G45.CA A182.CB -999 7.0 9.9 0.932671 bonus
Constraint P84.CB V228.CB -999 7.0 9.9 0.931798 bonus
Constraint A87.CB I111.CB -999 7.0 9.9 0.932325 bonus
Constraint F13.CB Y23.CB -999 7.0 9.9 0.928688 bonus
Constraint S27.CB V51.CB -999 7.0 9.9 0.928201 bonus
Constraint L47.CB I86.CB -999 7.0 9.9 0.928078 bonus
Constraint P84.CB A113.CB -999 7.0 9.9 0.928417 bonus
Constraint T115.CB V188.CB -999 7.0 9.9 0.928165 bonus
Constraint A26.CB D88.CB -999 7.0 9.9 0.926799 bonus
Constraint S50.CB T115.CB -999 7.0 9.9 0.926607 bonus
Constraint I156.CB C186.CB -999 7.0 9.9 0.926467 bonus
Constraint I171.CB A180.CB -999 7.0 9.9 0.926835 bonus
Constraint L187.CB Y212.CB -999 7.0 9.9 0.927586 bonus
Constraint C44.CB L83.CB -999 7.0 9.9 0.925520 bonus
Constraint L114.CB I157.CB -999 7.0 9.9 0.926283 bonus
Constraint P84.CB A182.CB -999 7.0 9.9 0.925157 bonus
Constraint L114.CB A182.CB -999 7.0 9.9 0.925865 bonus
Constraint L114.CB I185.CB -999 7.0 9.9 0.925767 bonus
Constraint V210.CB R229.CB -999 7.0 9.9 0.925588 bonus
Constraint V85.CB L114.CB -999 7.0 9.9 0.924315 bonus
Constraint A87.CB I116.CB -999 7.0 9.9 0.923806 bonus
Constraint V28.CB S50.CB -999 7.0 9.9 0.922352 bonus
Constraint V28.CB A89.CB -999 7.0 9.9 0.923130 bonus
Constraint T155.CB G184.CA -999 7.0 9.9 0.923390 bonus
Constraint I157.CB A182.CB -999 7.0 9.9 0.923084 bonus
Constraint I171.CB G184.CA -999 7.0 9.9 0.923634 bonus
Constraint P84.CB I111.CB -999 7.0 9.9 0.921587 bonus
Constraint T115.CB I133.CB -999 7.0 9.9 0.921593 bonus
Constraint I185.CB V228.CB -999 7.0 9.9 0.922086 bonus
Constraint T25.CB G45.CA -999 7.0 9.9 0.919764 bonus
Constraint F29.CB I46.CB -999 7.0 9.9 0.920509 bonus
Constraint D183.CB R229.CB -999 7.0 9.9 0.920562 bonus
Constraint F29.CB G49.CA -999 7.0 9.9 0.919080 bonus
Constraint A113.CB I157.CB -999 7.0 9.9 0.919084 bonus
Constraint V188.CB N214.CB -999 7.0 9.9 0.919955 bonus
Constraint L187.CB L207.CB -999 7.0 9.9 0.918820 bonus
Constraint P206.CB R229.CB -999 7.0 9.9 0.919301 bonus
Constraint L209.CB V231.CB -999 7.0 9.9 0.919535 bonus
Constraint Y23.CB C44.CB -999 7.0 9.9 0.917517 bonus
Constraint C44.CB D183.CB -999 7.0 9.9 0.917013 bonus
Constraint I46.CB L114.CB -999 7.0 9.9 0.917799 bonus
Constraint F29.CB L47.CB -999 7.0 9.9 0.916031 bonus
Constraint C44.CB I111.CB -999 7.0 9.9 0.915061 bonus
Constraint G45.CA G184.CA -999 7.0 9.9 0.915275 bonus
Constraint G49.CA D90.CB -999 7.0 9.9 0.916039 bonus
Constraint V51.CB D88.CB -999 7.0 9.9 0.916801 bonus
Constraint L187.CB L209.CB -999 7.0 9.9 0.917619 bonus
Constraint L146.CB A158.CB -999 7.0 9.9 0.915453 bonus
Constraint G189.CA Y212.CB -999 7.0 9.9 0.916019 bonus
Constraint I86.CB I185.CB -999 7.0 9.9 0.914404 bonus
Constraint L17.CB F42.CB -999 7.0 9.9 0.913020 bonus
Constraint A26.CB G45.CA -999 7.0 9.9 0.913222 bonus
Constraint T115.CB L132.CB -999 7.0 9.9 0.914076 bonus
Constraint G45.CA I111.CB -999 7.0 9.9 0.912909 bonus
Constraint I116.CB L132.CB -999 7.0 9.9 0.913740 bonus
Constraint P206.CB V228.CB -999 7.0 9.9 0.913619 bonus
Constraint S27.CB V188.CB -999 7.0 9.9 0.911657 bonus
Constraint V28.CB A52.CB -999 7.0 9.9 0.911436 bonus
Constraint G49.CA V188.CB -999 7.0 9.9 0.910953 bonus
Constraint V51.CB I65.CB -999 7.0 9.9 0.910506 bonus
Constraint S27.CB D90.CB -999 7.0 9.9 0.909169 bonus
Constraint V85.CB V228.CB -999 7.0 9.9 0.909804 bonus
Constraint G184.CA P206.CB -999 7.0 9.9 0.908979 bonus
Constraint I185.CB L203.CB -999 7.0 9.9 0.909614 bonus
Constraint S50.CB F62.CB -999 7.0 9.9 0.908439 bonus
Constraint A113.CB I156.CB -999 7.0 9.9 0.908399 bonus
Constraint C186.CB L196.CB -999 7.0 9.9 0.909229 bonus
Constraint A26.CB T115.CB -999 7.0 9.9 0.906679 bonus
Constraint I86.CB L106.CB -999 7.0 9.9 0.906714 bonus
Constraint A113.CB A158.CB -999 7.0 9.9 0.905937 bonus
Constraint T115.CB T155.CB -999 7.0 9.9 0.906775 bonus
Constraint A158.CB L209.CB -999 7.0 9.9 0.907386 bonus
Constraint Y212.CB V231.CB -999 7.0 9.9 0.904804 bonus
Constraint A26.CB S50.CB -999 7.0 9.9 0.903027 bonus
Constraint V28.CB L54.CB -999 7.0 9.9 0.902927 bonus
Constraint A113.CB I185.CB -999 7.0 9.9 0.903457 bonus
Constraint L114.CB I156.CB -999 7.0 9.9 0.903678 bonus
Constraint I157.CB L209.CB -999 7.0 9.9 0.902927 bonus
Constraint A158.CB D183.CB -999 7.0 9.9 0.903634 bonus
Constraint C44.CB V230.CB -999 7.0 9.9 0.902000 bonus
Constraint L47.CB C186.CB -999 7.0 9.9 0.901810 bonus
Constraint G48.CA D90.CB -999 7.0 9.9 0.902227 bonus
Constraint I77.CB I86.CB -999 7.0 9.9 0.902585 bonus
Constraint V103.CB L114.CB -999 7.0 9.9 0.902264 bonus
Constraint I157.CB V188.CB -999 7.0 9.9 0.901837 bonus
Constraint V231.CB T245.CB -999 7.0 9.9 0.902813 bonus
Constraint I86.CB V228.CB -999 7.0 9.9 0.901736 bonus
Constraint L114.CB A158.CB -999 7.0 9.9 0.900656 bonus
Constraint T119.CB V188.CB -999 7.0 9.9 0.901485 bonus
Constraint S27.CB C186.CB -999 7.0 9.9 0.899466 bonus
Constraint L47.CB F70.CB -999 7.0 9.9 0.899432 bonus
Constraint G49.CA T66.CB -999 7.0 9.9 0.899236 bonus
Constraint L114.CB C186.CB -999 7.0 9.9 0.900180 bonus
Constraint I133.CB I157.CB -999 7.0 9.9 0.898974 bonus