%  SAM: /projects/compbio/bin/i686/hmmscore v3.5 (May 1, 2004) compiled 07/18/04_06:53:46
%  (c) 1992-2001 Regents of the University of California, Santa Cruz
%
%          Sequence Alignment and Modeling Software System
%         http://www.cse.ucsc.edu/research/compbio/sam.html
%
% ----------------- Citations (SAM, SAM-T2K, HMMs) --------------------
% R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
%  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
% K. Karplus, et al., What is the value added by human intervention in protein
%  structure prediction, Proteins: Stucture, Function, Genetics 45(S5):86--91, 2001.
% A. Krogh et al., Hidden Markov models in computational biology:
%  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
% ---------------------------------------------------------------------
%  dsspfoo.1.T0243.t04-100-30-stride-ebghtl   Host: cheep    Mon Jul 19 10:57:52 2004
%  karplus                                    Dir:  /projects/compbio/experiments/protein-predict/casp6/T0243
% ---------------------------------------------------------------------
% Inserted Files: 
% Database Files:  /projects/compbio/experiments/models.97/indexes/t04.x-seqs,/projects/compbio/experiments/models.97/indexes/t04.2ds
%
% Subsequence-submodel (local) (SW = 2)
% Simple scores adjusted by +1.5*ln(seq len) (adjust_score = 2)
% Track 0 FIMs added (geometric mean of match probabilities (6))
% Track 0 Coeff 1.000 File T0243.t04.w0.5.mod
% Track 1 FIMs added (the generic node (5))
% Track 1 Coeff 0.300 File T0243.t04.stride-ebghtl.mod
% Score DP Method: forward all-paths (dpstyle = 0)
% Align DP Method: viterbi (adpstyle = 1)
% 6616 sequences, 1561821 residues, 94 nodes, 30.45 seconds
%
% Sequence scores selected if better than:
%	 E-value (Emax 4.0e+01) (select_score=4)
%
% Simple: NLL-NULL using FIM probabilities
% Reverse: NLL-NULL for the reverse sequence NULL model
%    Calculated when Simple < simple_threshold (0.00)
% E-value on N (=10050) sequences:
%    N / (1 + exp(-(lambda(=1.7861) * Reverse)^tau(=0.7229)))
%    Calculated when Simple < simple_threshold (0.00)
%    Rescale E-values or use -dbsize for multiple scoring runs.
% Scores sorted by E-value, best first
%
% Sequence ID   Length      Simple     Reverse     E-value      X count
1vk5A             157       -17.27       -8.44     8.20e+00
1cl1A             395       -17.97       -8.20     9.54e+00
1n6zA             105       -16.53       -8.04     1.05e+01
1h1dA             221       -16.81       -6.85     2.22e+01
1oivA             191       -16.55       -6.77     2.34e+01
1jj2I             145       -16.72       -6.64     2.55e+01
1c24A             263       -16.43       -6.46     2.86e+01
1f46A             140       -15.86       -6.45     2.88e+01
1bx4A             345       -15.48       -6.38     3.01e+01
1kkhA             317       -15.64       -6.13     3.55e+01
1lnwA             147       -15.21       -6.08     3.68e+01
1pwaA             162       -13.72       -6.02     3.82e+01
1djxB             624       -14.75       -5.97     3.94e+01