%  SAM: /projects/compbio/bin/i686/hmmscore v3.4 (July 31, 2003) compiled 02/04/04_14:53:24
%  (c) 1992-2001 Regents of the University of California, Santa Cruz
%
%          Sequence Alignment and Modeling Software System
%         http://www.cse.ucsc.edu/research/compbio/sam.html
%
% ----------------- Citations (SAM, SAM-T2K, HMMs) --------------------
% R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
%  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
% K. Karplus, et al., What is the value added by human intervention in protein
%  structure prediction, Proteins: Stucture, Function, Genetics 45(S5):86--91, 2001.
% A. Krogh et al., Hidden Markov models in computational biology:
%  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
% ---------------------------------------------------------------------
%  dsspfoo.1.T0242.t04-100-30-dssp-ehl2   Host: cheep    Wed Jul 14 15:25:55 2004
%  karplus                                Dir:  /projects/compbio/experiments/protein-predict/casp6/T0242
% ---------------------------------------------------------------------
% Inserted Files: 
% Database Files:  /projects/compbio/experiments/models.97/indexes/t04.x-seqs,/projects/compbio/experiments/models.97/indexes/t04.dssps
%
% Subsequence-submodel (local) (SW = 2)
% Simple scores adjusted by +1.5*ln(seq len) (adjust_score = 2)
% Track 0 FIMs added (geometric mean of match probabilities (6))
% Track 0 Coeff 1.000 File T0242.t04.w0.5.mod
% Track 1 FIMs added (the generic node (5))
% Track 1 Coeff 0.300 File T0242.t04.dssp-ehl2.mod
% Score DP Method: forward all-paths (dpstyle = 0)
% Align DP Method: viterbi (adpstyle = 1)
% 6616 sequences, 1561821 residues, 117 nodes, 35.79 seconds
%
% Sequence scores selected if better than:
%	 E-value (Emax 4.0e+01) (select_score=4)
%
% Simple: NLL-NULL using FIM probabilities
% Reverse: NLL-NULL for the reverse sequence NULL model
%    Calculated when Simple < simple_threshold (0.00)
% E-value on N (=10050) sequences:
%    N / (1 + exp(-(lambda(=1.6962) * Reverse)^tau(=0.7506)))
%    Calculated when Simple < simple_threshold (0.00)
%    Rescale E-values or use -dbsize for multiple scoring runs.
% Scores sorted by E-value, best first
%
% Sequence ID   Length      Simple     Reverse     E-value      X count
1fxlA             167       -22.73      -12.80     4.22e-01
1dgyA             363       -23.66      -11.93     7.10e-01
1liiA             363       -23.66      -11.93     7.10e-01
1fs7A             485       -18.43       -9.95     2.40e+00
1uqrA             154       -18.26       -8.66     5.48e+00
1vkmA             297       -17.67       -8.26     7.10e+00
1ir6A             424       -17.17       -8.18     7.51e+00
1uu1A             335       -18.60       -8.13     7.73e+00
1vicA             262       -18.41       -7.48     1.19e+01
1n3yA             198       -18.30       -7.44     1.23e+01
1lsuA             147       -17.49       -7.01     1.65e+01
1pyoA             167       -16.36       -6.91     1.77e+01
1hyeA             313       -18.44       -6.90     1.78e+01
1id0A             152       -19.36       -6.80     1.90e+01
1f6bA             198       -15.45       -6.71     2.02e+01
1o0wA             252       -16.73       -6.47     2.39e+01
1kq3A             376       -16.36       -6.43     2.45e+01
1rypA             243       -17.23       -6.37     2.57e+01
1ugpA             203       -15.74       -6.30     2.70e+01
1ireA             204       -15.74       -6.29     2.71e+01
1b9wA              89       -14.45       -6.16     2.97e+01
1id1A             153       -16.44       -6.14     3.03e+01
1gwiA             411       -14.25       -6.12     3.05e+01
1nh9A              87       -17.40       -6.12     3.05e+01
1e4fT             419       -16.35       -6.05     3.21e+01
1s72S              85       -15.06       -6.03     3.26e+01
1jj2R              84       -15.04       -6.01     3.32e+01
1sjwA             144       -15.56       -5.96     3.43e+01
1bjwA             382       -15.13       -5.93     3.50e+01
1l3iA             192       -16.85       -5.86     3.68e+01
1jwiA             131       -14.33       -5.82     3.78e+01
1qxhA             167       -15.59       -5.81     3.83e+01
1fm0E             150       -14.74       -5.79     3.86e+01