% SAM: /projects/compbio/bin/i686/modelfromalign v3.4 (July 31, 2003) compiled 01/19/04_14:11:17 % (c) 1992-2001 Regents of the University of California, Santa Cruz % % Sequence Alignment and Modeling Software System % http://www.cse.ucsc.edu/research/compbio/sam.html % % ----------------- Citations (SAM, SAM-T2K, HMMs) -------------------- % R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: % Extension and analysis of the basic method, CABIOS 12:95-107, 1996. % K. Karplus, et al., What is the value added by human intervention in protein % structure prediction, Proteins: Stucture, Function, Genetics 45(S5):86--91, 2001. % A. Krogh et al., Hidden Markov models in computational biology: % Applications to protein modeling, JMB 235:1501-1531, Feb 1994. % --------------------------------------------------------------------- % T0197 Host: cheep Tue Jun 8 09:31:00 2004 % karplus Dir: /projects/compbio/experiments/protein-predict/casp6/T0197 % --------------------------------------------------------------------- % Prior File: /projects/compbio/lib/recode3.20comp(Name: recode3.20comp) % 20 priors on 20 characters. % Alignment weights from internal calc. Total (1.00) Max (1.00) Min (1.00) % Weights from alignment method 1 (karplus), b=0.800000, e=10.000000 MODEL -- Model from alignment file T0197.a2m BINARY alphabet protein ³³ÿÿÿÿãoŸ=Qˆ©¥x?5˜B>àK=«Y=<·?"?q™>EŠˆ=BÄwÚ¬>©¥x?5˜B>àK=«Y=<·?"?Ç…B=.<+^D=—ýN=| =Ó±7=1‹>aâ<ÜsT=‘¡?=FmÚ¬>©¥x?5˜B>àK=«Y=<·?"?Ç…B=.<+^D=—ýN=| =Ó±7=1‹>aâ<ÜsT=‘¡?=FmÚ¬>©¥x?5˜B>àK=«Y=<·?"?Ç…B=.<+^D=—ýN=| =Ó±7=1‹>aâ<ÜsT=‘¡?=FmÚ¬>©¥x?5˜B>àK=«Y=<·?"?Ç…B=.<+^D=—ýN=| =Ó±7=1‹>aâ<ÜsT=‘¡?=FmÚ¬>©¥x?5˜B>àK=«Y=<·?"?Ç…B=.<+^D=—ýN=| =Ó±7=1‹>aâ<ÜsT=‘¡?=FmÚ¬>©¥x?5˜B>àK=«Y=<·?"?Ç…B=.<+^D=—ýN=| =Ó±7=1‹>aâ<ÜsT=‘¡?=FmÚ¬>©¥x?5˜B>àK=«Y=<·?"?TðŒ=pHæ rÚ¬>©¥x?5˜B>àK=«Y=<·?"?Îúª=ÿ”?sH=“3=Ö²é;–ø¥<ûãQ?žŒ<ðh4>Ú¬>©¥x?5˜B>àK=«Y=<·?"?}4p=Ç7½;Àù¸=nû•>Øxd<ó‰,=§åžÚ¬>©¥x?5˜B>àK=«Y=<·?"?/B’=±€<)ûŠ<®ÃÞ<Ã€=CI¸<ìÎ@<(Î>Q8Ù<_Êû=ç××<l„<®¹- <ðÛ¿<ûãQ?žŒ<ðh4>Ú¬>©¥x?5˜B>àK=«Y=<·?"?}4p=Ç7½;Àù¸=nû•>Øxd<ó‰,=§åžÚ¬>©¥x?5˜B>àK=«Y=<·?"?C\=úT<Ž¶c<@µ<¦<=“j‰<Ü•9<›ú•>åæ½<â- 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