(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html

Citations (SAM, SAM-T99, HMMs)

Sequence numbers correspond to the following labels:

    • miniAGRP
    • gi|13096183|pdb|1HYK|A_2:35 Chain A, Agouti-Related Protein (87-132) (Ac-Agrp(87-132)) [Taxonomy]
    • gi|57087209|ref|XP_536816.1|_87:120 PREDICTED: similar to ATPase, H+ transporting, lysosomal, V0 subunit D isoform 1 [Canis familiaris]
    • gi|24159122|pdb|1MR0|A_2:34 Chain A, Solution Nmr Structure Of Agrp(87-120; C105a) [Taxonomy]
    • gi|61680533|pdb|1Y7K|A_14:47 Chain A, Nmr Structure Family Of Human Agouti Signalling Protein (80- 132: Q115y, S124y) [Taxonomy]
    • gi|61680532|pdb|1Y7J|A Chain A, Nmr Structure Family Of Human Agouti Signalling Protein (80- 132: Q115y, S124y) [Taxonomy]
              10        20        30    
              |         |         |    
   1 CVRLHESCLGQQVPCCDPAATCYCRFFNAFCYCR
   2 CVRLHESCLGQQVPCCDPCATCYCRFFNAFCYCR
   3 CVRLHESCLGQQVPCCDPCATCYCRFFNAFCYCR
   4 CVRLHESCLGQQVPCCDPCATCYCRFFNAFCYCR
   5 CVRLHESCLGHQVPCCDPCATCYCRFFNAFCYCR
   6 CVRLHESCLGQQVPCCDPCATCYCRFFNAFCYCR
   7 CVRLHESCLGQQVPCCDPCATCYCRFFNAFCYCR
   8 CVRLHESCLGHQVPCCDPCATCYCRFFNAFCYCR
   9 CVRLHESCLGHQVPCCDPCATCYCRFFNAFCYCR
  10 CVRLHESCLGHQVPCCDPCATCYCRFFNAFCYCR
  11 CVRLHESCLGHQVPCCDPCATCYCRFFNAFCYCR
  12 -VRLHESCLGQQVPCCDPAATCYCRFFNAFCYCR
  13 CVRLHESCLGQQVPCCDLCATCYCRFFNTFCYCR
  14 CVRLLESCLGHQIPCCDPCATCYCRFFNAFCYCR
  15 CVRLLESCLGHQIPCCDPCATCYCRFFNAFCYCR
  16 CVRLLESCLGHQIPCCDPCATCYCRFFNAFCYCR
  17 CVRLLESCLGHQIPCCDPCATCYCRFFNAFCYCR
  18 CVRLHESCLGHQVPCCDPCATCYCRFFNAFC---
  19 CVRLHESCLGQQVPCCDLCATCYCRFFK-TCYCR
  20 CIPHQQSCLGYPLPCCDPCDTCYCRFFNAICYCR
  21 CIPHQQSCLGHHLPCCNPCDTCYCRFFKAFCYCR
  22 CIPHQQSCLGHHLPCCNPCDTCYCRFFKAFCYCR
  23 CVRLHESCLGHQVPCCDPCATCYCRFFN------
  24 CVATRNSCKPPAPACCDPCASCYCRFFRSACYCR
  25 CVRLLESCLGHQIPCCDPCATC------------
  26 CSRLKDSCS-PYMPCCDPCASCHCRLFNTICNC-