(c) 1992-2000 Regents of the University of California, Santa Cruz
Sequence Alignment and Modeling Software System
http://www.cse.ucsc.edu/research/compbio/sam.html
Citations (SAM, SAM-T99, HMMs)
- R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
- K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
- A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
Sequence numbers correspond to the following labels:
-
- ACH7_SHORT (P36544) Neuronal acetylcholine receptor protein, alpha-7 chain precursor
-
- gi|57105254|ref|XP_543227.1|_87:296 PREDICTED: similar to Neuronal acetylcholine receptor protein, alpha-2 chain precursor [Canis familiaris]
-
- gi|55962651|emb|CAI11602.1|_8:217 novel cholinergic receptor, nicotinic, alpha polypeptide protein [Danio rerio]
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- gi|30582633|gb|AAP35543.1|_32:241 cholinergic receptor, nicotinic, alpha polypeptide 3 [Homo sapiens]
- gi|19923122|ref|NP_000734.2| cholinergic receptor, nicotinic, alpha polypeptide 3 [Homo sapiens]
- gi|12653483|gb|AAH00513.1| Cholinergic receptor, nicotinic, alpha polypeptide 3 [Homo sapiens]
- gi|12804469|gb|AAH01642.1| Cholinergic receptor, nicotinic, alpha polypeptide 3 [Homo sapiens]
- gi|12804275|gb|AAH02996.1| Cholinergic receptor, nicotinic, alpha polypeptide 3 [Homo sapiens]
-
-
-
-
-
-
-
-
-
-
-
-
- gi|34986|emb|CAA37625.1|_1:210 neuronal nicotinic acetylcholine receptor alpha-3 subunit [Homo sapiens]
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- gi|56800095|emb|CAI35359.1|_39:248 glycine receptor, alpha 1 subunit [Mus musculus]
- gi|12644459|sp|Q64018|GRA1_MOUSE Glycine receptor alpha-1 chain precursor (Glycine receptor 48 kDa subunit) (Strychnine binding subunit) [Taxonomy]
- gi|9247216|gb|AAB32158.2| inhibitory glycine receptor alpha 1 subunit long form; GLRA1 protein; GlyR alpha 1 [Mus sp.]
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
-
- gi|37606152|emb|CAE49579.1|_24:228 novel protein similar to mouse and rodent cholinergic receptor, nicotinic, alpha polypeptide 7 (CHRNA7) [Danio rerio]
-
-
-
-
-
-
-
-
-
-
-
-
-
-