Hongyun Wang's Publications


  1. H. Wang and H. Zhou (2008). Stokes efficiency of molecular motor-cargo systems Abstract and Applied Analysis In Press .

  2. H. Wang, H. Zhou, and M. G. Forest (2008). Sheared nematic liquid crystal polymer monolayers Discrete and Continuous Dynamical Systems - Series B In Press .

  3. L. Wilson, H. Zhou, W. Kang, and H. Wang (2008). Controllability of Non-Newtonian Fluids Under Homogeneous Extensional Flow Applied Mathematical Sciences In Press .

  4. H. Wang (2008). Stokes Efficiency of Molecular Motors with Inertia Applied Mathematics Letters In Press .

  5. H. Wang and H. Zhou (2008). Multiple branches of ordered states of polymer ensembles with the Onsager excluded volume potential Physics Letters A In Press .

  6. H. Wang (2008). Several issues in modeling molecular motors. Journal of Computational and Theoretical Nanoscience In Press .

  7. H. Zhou, W. Kang, A. Krener and H. Wang (2008). Homogeneous flow field effect on the control of Maxwell materials. Journal of Non-Newtonian Fluid Mechanics 150, 104-115.

  8. A. Brandwajn and H. Wang (2008). A Conditional Probability Approach to M/G/1-like Queues. Performance Evaluation In Press .

  9. H. Wang and H. Zhou (2008). Exact solution of a constrained optimization problem in thermoelectric cooling. Applied Mathematical Sciences 2, 177-186.

  10. G. Ji, Q. Wang, P. Zhang, H. Wang, and H. Zhou (2007). Steady states and their stability of homogeneous, rigid, extended nematic polymers under imposed magnetic fields. Communications in Mathematical Sciences 5(4), 917-950.

  11. H. Wang (2007). A New Derivation of the Randomness Parameter. Journal of Mathematical Physics 48, Article 103301.
    This paper has been selected in the October 15, 2007 issue of Virtual Journal of Biological Physics Research

  12. H. Zhou and H. Wang (2007). Elongational perturbations on nematic liquid crystal polymers under a weak shear. Physics of Fluids 19, Article 103107.

  13. H. Wang and H. Zhou (2007). Monotonicity of a key function arised in studies of nematic liquid crystal polymers. Abstract and Applied Analysis 2007, Article 76209.

  14. H. Zhou and H. Wang (2007). Asymptotic study on the extendability of equilibria of nematic polymers. International Journal of Contemporary Mathematical Sciences 2, 1009-1023.

  15. H. Wang (2008). An Improved WPE Method for Solving Discontinuous Fokker-Planck Equations. International Journal of Numerical Analysis and Modeling 5, 1-23.

  16. H. Wang (2007). Convergence of a numerical method for solving discontinuous Fokker-Planck equations. SIAM Journal on Numerical Analysis 45, 1425-1452. [PDF file]

  17. Z. Bian, H. Wang, Q. Zhou, and A. Shakouri (2007). Maximum cooling temperature and uniform efficiency criterion for inhomogeneous thermoelectric materials Physical Review B 75, Article 245208. [PDF file]

  18. H. Zhou, L. Wilson and H. Wang (2007). On the equilibria of the extended nematic polymers under elongational flow. Abstract and Applied Analysis 2007, Article 36267. [PDF file]

  19. H. Wang and T. Elston (2007). Mathematical and computational methods for studying energy transduction in protein motors. Journal of Statistical Physics 128, 35-76. [PDF file]

  20. H. Zhou, H. Wang and Q. Wang (2007). Nonparallel solutions of extended nematic polymers under an external field. Discrete and Continuous Dynamical Systems - Series B 7, 907-929. [PDF file]

  21. H. Zhou and H. Wang (2007). Steady States and Dynamics of 2-D Nematic Polymers Driven by an Imposed Weak Shear. Communications in Mathematical Sciences 5, 113-132. [PDF file]

  22. H. Wang and H. Qian (2007). On Detailed Balance and Reversiblity of Semi-Markov Processes and Single-molecule Enzyme Kinetics. Journal of Mathematical Physics 48, Article 013303. [PDF file]

  23. H. Zhou, H. Wang, Q. Wang and M. G. Forest (2007). Characterization of stable kinetic equilibria of rigid, dipolar rod ensembles for coupled dipole-dipole and Maier-Saupe potentials. Nonlinearity 20, 277-297. [PDF file]

  24. H. Wang (2006). A robust mathematical formulation for studying elastically coupled motor-cargo systems. Journal of Computational and Theoretical Nanoscience 3, 922-932. [PDF file]. For colored figures, see the PDF page proofs of the article.

  25. H. R. Sadjadpour, K. Kim, H. Wang, R. S. Blum and Y. H. Lee (2006). Application of Randomization Techniques to Space-time Convolutional Codes. IEEE Transactions on Signal Processing 54, 4484-4489. [PDF file]

  26. H. Qian and H. Wang (2006). Continuous Time Random Walks in Closed and Open Single-Molecule Systems with Microscopic Reversibility. Europhysics Letters 76, 15-21 . [PDF file]

  27. H. Wang (2006). Motor potential profile and a robust method for extracting it from time series of motor positions. Journal of Theoretical Biology 242, 908-921. [PDF file]

  28. J. Fricks, H. Wang and T. Elston (2006). A numerical algorithm for investigating the role of the motor-cargo linkage in molecular motor-driven transport. Journal of theoretical Biology 239, 33-48. [PDF file]

  29. H. Wang (2005). Chemical and mechanical efficiencies of molecular motors and implications for motor mechanisms. Journal of Physics: Condensed Matter 17, S3997-S4014. [PDF file]

  30. H. Zhou, H. Wang, M. G. Forest and Q. Wang (2005). A new proof on axisymmetric equilibria of a three-dimensional Smoluchowski equation. Nonlinearity 18, 2815-2825. [PDF file]

  31. J. Xing, H. Wang and G. Oster (2005). From Continuum Fokker-Planck Models to Discrete Kinetic Models. Biophysical Journal 89, 1551-1563. [PDF file]

  32. H. R. Sadjadpour, K. Kim, H. Wang, R. S. Blum and Y. H. Lee (2005). Application of randomization techniques to space-time convolutional codes. 2005 International Conference on Wireless Networks, Communications and Mobile Computing 2, 1491-1496. [PDF file]

  33. J. Xing, H. Wang, C. von Ballmoos, P. Dimroth and G. Oster (2004). Torque generation by the Fo motor of the sodium ATPase. Biophysical Journal 87, 2148-2163. [PDF file]

  34. H. R. Sadjadpour and H. Wang (2004). Exploring New Sources of Diversity in Wireless Systems. 2004 IEEE 60th Vehicular Technology Conference 5, 3644-3648 [PDF file]

  35. S. Sun, H. Wang and G. Oster (2004). Asymmetry in the F1-ATPase and its implication for the rotation cycle. Biophysical Journal 86, 1373-1384. [PDF file]

  36. H. Wang and H. Zhou (2003). Slender Vortex Motion. Recent Research Developments in Fluid Dynamics 4, 159-179. [PDF file]

  37. H. Wang (2003). Mathematical theory of molecular motors and a new approach for uncovering motor mechanism. IEE Proceedings Nanobiotechnology 150, 127-133. [PDF file]

  38. I. Antes, D. Chandler, H. Wang and G. Oster (2003). A molecular dynamics study of the unbinding of ATP from F1-ATPase. Biophysical Journal 85, 695-706. [PDF file]

  39. H. Wang, C. Peskin and T. Elston (2003). A robust numerical algorithm for studying biomolecular transport process. Journal of theoretical Biology 221, 491-511. [PDF file]

  40. G. Oster and H. Wang (2003). Rotary protein motors. Trends in Cell Biology 13, 114-121. [PDF file]

  41. G. Oster and H. Wang (2003). How protein motors convert chemical energy into mechanical work. In: Molecular Motors, edited by M. Schliwa. (Wiley-VCH). [PDF file]

  42. H. Wang and G. Oster (2002). Ratchets, power strokes, and molecular motors. Applied Physics A 75, 315-323. [PDF file]

  43. A. Mogilner, T. Elston, H. Wang, and G. Oster (2002). Molecular motors: theory. In: Joel Keizer's Computational Cell Biology, edited by C. Fall, E. Marland, J. Tyson, and J. Wagner. (Springer, New York). [PDF file]

  44. A. Mogilner, T. Elston, H. Wang, and G. Oster (2002). Molecular motors: examples. In: Joel Keizer's Computational Cell Biology, edited by C. Fall, E. Marland, J. Tyson, and J. Wagner. (Springer, New York). [PDF file]

  45. H. Wang and G. Oster (2002). The Stokes efficiency for molecular motors and its applications. Europhysics Letters 57, 134-140. [PDF file]

  46. G. Oster and H. Wang (2000). Why is the mechanical efficiency of F 1 ATPase so high? Journal of Bioenergetics and Biomembranes 32, 459-469. [PDF file]

  47. M. Grabe, H. Wang and G. Oster (2000). The mechanochemistry of the V-ATPase proton pumps. Biophysical Journal 78, 2798-2813. [PDF file]

  48. G. Oster and H. Wang (2000). Reverse engineering a protein: The mechanochemistry of ATP synthase. Biochimica et Biophysica Acta 1458, 482-510. [PDF file]

  49. G. Oster, H. Wang and M. Grabe (2000). How Fo-ATPase generates rotary torque. Reverse engineering a protein: The mechanochemistry of ATP synthase. Philosophical Transactions of the Royal Society of London. Series B: Biological Sciences 355, 523-528. [PDF file]

  50. G. Oster, H. Wang (1999). ATP synthase: 2 motors, 2 fuels. Structure 7, R67-R72. [PDF file]

  51. P. Dimroth, H. Wang, M. Grabe, G. Oster (1999). Energy transduction in the sodium F-ATPase of Propionigenium modestum. Proceedings of the National Academy of Sciences 96, 4924-4929. [PDF file]

  52. G. Oster and H. Wang (1999). ATP Synthase: Two rotary molecular motors working together. In: Encyclopedia of Molecular Biology, edited by T. Creighton. (Wiley, New York). [PDF file]

  53. H. Wang and G. Oster (1998). Energy transduction in the F1 motor of ATP synthase. Nature 396, 279-282. [PDF file]

  54. H. Wang (1998). Short wave instability on vortex filaments. Physical Review Letters 80, 4665-4668. [PDF file]

  55. H. Wang, T. Elston, A. Mogilner and G. Oster (1998). Force generation In RNA polymerase. Biophysical Journal 74, 1186-1202. [PDF file]

  56. T. Elston, H. Wang and G. Oster (1998). Energy transduction in ATP synthase. Nature 391, 510-513. [PDF file]

  57. H. Wang (1996). A study of short wave instability on vortex filaments. Ph.D. Dissertation, University of California, Berkeley.

  58. H. Wang (1993). A high order vortex method for patches of constant vorticity. LBL report, Lawrence Berkeley National Laboratory.

  59. H. Wang (1987). A simple conservative difference scheme for solving full Euler equations. Chinese Journal Computational Physics 4, 79-84.