Customized Genome Browser Publications Deyou Zheng, Adam Frankish, Robert Baertsch, Philipp Kapranov, Alexandre Reymond , Siew Woh Choo , Yontao Lu , France Denoeud , Stylianos E Antonarakis , Michael Snyder , Yijun Ruan, Chia-Lin Wei , Thomas R. Gingeras , Roderic Guigo , Jennifer Harrow , and Mark B. Gerstein Pseudogenes in the ENCODE Regions: Consensus Annotation, Analysis of Transcription and Evolution. Genome Research Accepted. Katherine S. Pollard, Sofie R. Salama, Bryan King, Andrew Kern, Tim Dreszer, Sol Katzman, Adam Siepel, Jakob Skou Pedersen, Gill Bejerano, Robert Baertsch, Kate R. Rosenbloom, Jim Kent, David Haussler Forces Shaping the Fastest Evolving Regions in the Human Genome PLoS Genet. In press. Bowman BJ, McCall ME, Baertsch R, Bowman EJ. A model for the proteolipid ring and Bafilomycin/Concanamycin binding site in the vacuolar ATPase of Neurospora crassa. J Biol Chem. 2006 Aug 15; [Epub ahead of print] Schneider KL, Pollard KS, Baertsch R, Pohl A, Lowe TM. The UCSC Archaeal Genome Browser. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D407-10. Hinrichs AS, Karolchik D, Baertsch R, Barber GP, Bejerano G, Clawson H, Diekhans M, Furey TS, Harte RA, Hsu F, Hillman-Jackson J, Kuhn RM, Pedersen JS, Pohl A, Raney BJ, Rosenbloom KR, Siepel A, Smith KE, Sugnet CW, Sultan-Qurraie A, Thomas DJ, Trumbower H, Weber RJ, Weirauch M, Zweig AS, Haussler D, Kent WJ. The UCSC Genome Browser Database: update 2006. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D590-8. Robertson MP, Igel H, Baertsch R, Haussler D, Ares M Jr, Scott WG. The structure of a rigorously conserved RNA element within the SARS virus genome. PLoS Biol. 2005 Jan;3(1):e5. Epub 2004 Dec 28. W. James Kent, Robert Baertsch , Angie Hinrichs , Webb Miller and David Haussler. Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes PNAS, September 30, 2003, vol. 100,no. 20 pp 11484-11489 Jeffrey A Bailey, Robert Baertsch, W James Kent, David Haussler and Evan E Eichler. Hotspots of mammalian chromosomal evolution" Genome Biology 2004, 5:R23 Rat Genome Sequencing Project Consortium. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature. 2004 Apr 1;428(6982):493-521. Schwartz S, Kent WJ, Smit A, Zhang Z, Baertsch R, Hardison RC, Haussler D, Miller W. "Human-mouse alignments with BLASTZ." Genome Research Vol. 13, Issue 1, 103-107, January 2003 [pdf] [ps] Software Hillier et al."The DNA sequence of human chromosome 7" Nature 424, 157 - 164 (10 July 2003); doi:10.1038/nature01782 Mouse Genome Sequencing Consortium. "Initial sequencing and comparative analysis of the mouse genome." Nature 420, 520-562. Karolchik D, Baertsch R, Diekhans M, Furey TS, Hinrichs A, Lu YT, Roskin KM, Schwartz M, Sugnet CW, Thomas DJ, Weber RJ, Haussler D, Kent WJ. "The UCSC Genome Browser Database." Nucleic Acids Res 2003 Jan 1;31(1):51-4