# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1zvdA 380 1.10e+00 1r12A 258 2.38e+00 e.4.1.1 96780 1yaxA 153 2.67e+00 1nt4A 391 3.22e+00 c.60.1.2 92102 1lbeA 258 3.31e+00 1lbeA e.4.1.1 42773 1x9mA 698 5.09e+00 1eni 138 6.57e+00 2end a.18.1.1 16403 1urqA 63 6.87e+00 h.1.15.1 107994 1enk 138 7.17e+00 2end a.18.1.1 16402 1exbA 332 8.92e+00 1qrqA c.1.7.1 28666 1vasA 137 8.93e+00 2end a.18.1.1 16404 1zsxA 347 9.20e+00 1s5lX 50 9.47e+00 1enj 138 9.67e+00 2end a.18.1.1 16401 1h6hA 143 9.75e+00 d.189.1.1 65681 1xc0A 33 9.94e+00 j.6.1.1 109542 2end 138 1.00e+01 2end a.18.1.1 16400 1sgg 75 1.08e+01 1b4fA a.60.1.2 17943 1t7pA 698 1.13e+01 1t7pA c.55.3.5 33712 e.8.1.1 43005 1z83A 196 1.16e+01 2lhb 149 1.17e+01 2fal a.1.1.2 15597 1m6dA 214 1.18e+01 d.3.1.1 84849 2f96A 224 1.19e+01 1yw0A 276 1.21e+01 1f07A 321 1.22e+01 1ezwA c.1.16.3 59560 1ovnA 248 1.32e+01 a.71.1.1 93602 c.47.1.7 93603 1vk9A 151 1.42e+01 c.139.1.1 108640 1tueB 218 1.44e+01 b.91.1.1 107324 1qrqA 325 1.52e+01 1qrqA c.1.7.1 28667 1jeyB 565 1.53e+01 1jeqB b.131.1.2 90372 c.62.1.4 90373 1su4A 994 1.56e+01 b.82.7.1 98993 c.108.1.7 98994 d.220.1.1 98995 f.33.1.1 98996 1r5zA 323 1.59e+01 f.40.1.1 97135 3pbgA 468 1.60e+01 1e70M c.1.8.4 28951 1ak0 270 1.60e+01 1ak0 a.124.1.2 19345 1jeqB 565 1.61e+01 1jeqB b.131.1.2 90368 c.62.1.4 90369 1n2sA 299 1.74e+01 c.2.1.2 79857 1pbgA 468 1.85e+01 1e70M c.1.8.4 28946 1lfdA 87 1.88e+01 1lfdA d.15.1.5 37622 1wpgA 994 2.11e+01 1bg6 359 2.21e+01 1bg6 a.100.1.5 18810 c.2.1.6 30214 1hcc 59 2.25e+01 1hfh g.18.1.1 44820 1b4fG 82 2.26e+01 1b4fA a.60.1.2 17940 1ws6A 171 2.29e+01 1m2eA 135 2.32e+01 c.23.1.5 78478 1s4bP 674 2.47e+01 d.92.1.5 105252 1f88A 348 2.49e+01 1f88A f.13.1.2 43429 1ll2A 333 2.52e+01 c.68.1.14 74005 1t0qA 498 2.58e+01 a.25.1.2 106220 1ash 150 2.58e+01 1ash a.1.1.2 15622 1b4fA 82 2.59e+01 1b4fA a.60.1.2 17934 1qhtA 775 2.60e+01 1tgoA c.55.3.5 33722 e.8.1.1 43011 1oya 400 2.65e+01 1oyc c.1.4.1 28604 1wwpA 119 2.70e+01 2c3vA 102 2.73e+01 1oyc 400 2.73e+01 1oyc c.1.4.1 28603 1f0mA 82 2.74e+01 1b4fA a.60.1.2 17942 1rzl 91 2.77e+01 1rzl a.52.1.1 17817 1tbfA 347 2.81e+01 a.211.1.2 106743 1ll0A 339 2.90e+01 c.68.1.14 73995 1bx4A 345 2.92e+01 1bx4A c.72.1.1 34935 1b25A 619 2.94e+01 1b25A a.110.1.1 19044 d.152.1.1 41796 1lxdA 100 2.96e+01 1lfdA d.15.1.5 37624 1z3xA 238 2.98e+01 1lj8A 493 3.00e+01 a.100.1.9 90392 c.2.1.6 90393 1u5tA 233 3.06e+01 a.4.5.54 107684 a.4.5.54 107685 1tgoA 773 3.28e+01 1tgoA c.55.3.5 33721 e.8.1.1 43010 1hqkA 154 3.31e+01 c.16.1.1 65902 1k9tA 540 3.36e+01 b.1.18.2 77298 c.1.8.5 77299 d.26.3.1 77300 1zsyA 357 3.38e+01 1edqA 540 3.45e+01 1ctn b.1.18.2 21873 c.1.8.5 29002 d.26.3.1 38436 1dmtA 696 3.46e+01 1dmtA d.92.1.4 40296 3adk 195 3.51e+01 1zin c.37.1.1 31885 1r1hA 696 3.63e+01 d.92.1.4 104756 1oyb 400 3.65e+01 1oyc c.1.4.1 28602 1m3yA 413 3.76e+01 b.121.2.3 78579 b.121.2.3 78580 2bykA 140 3.81e+01 1o51A 114 3.89e+01 d.58.5.4 92480 1nktA 922 3.99e+01 a.162.1.1 85830 a.172.1.1 85831 c.37.1.19 85832 c.37.1.19 85833 1a17 166 3.99e+01 1a17 a.118.8.1 19206