# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1nt4A 391 1.02e+00 c.60.1.2 92102 1m6dA 214 1.13e+00 d.3.1.1 84849 1eni 138 1.36e+00 2end a.18.1.1 16403 1exbA 332 1.44e+00 1qrqA c.1.7.1 28666 1enk 138 1.51e+00 2end a.18.1.1 16402 1r5zA 323 1.57e+00 f.40.1.1 97135 2end 138 1.58e+00 2end a.18.1.1 16400 1vasA 137 1.66e+00 2end a.18.1.1 16404 1zsxA 347 1.67e+00 1enj 138 1.68e+00 2end a.18.1.1 16401 1f07A 321 2.06e+00 1ezwA c.1.16.3 59560 1x9mA 698 2.10e+00 1wpgA 994 2.34e+00 1urqA 63 2.84e+00 h.1.15.1 107994 1ovnA 248 3.55e+00 a.71.1.1 93602 c.47.1.7 93603 1su4A 994 4.46e+00 b.82.7.1 98993 c.108.1.7 98994 d.220.1.1 98995 f.33.1.1 98996 1zvdA 380 4.77e+00 1h6hA 143 4.90e+00 d.189.1.1 65681 1ii6A 368 5.74e+00 1bg2 c.37.1.9 62413 1tueB 218 5.83e+00 b.91.1.1 107324 1jeyB 565 5.86e+00 1jeqB b.131.1.2 90372 c.62.1.4 90373 1ll0A 339 5.95e+00 c.68.1.14 73995 1wwpA 119 5.97e+00 1f88A 348 6.02e+00 1f88A f.13.1.2 43429 1jeqB 565 6.05e+00 1jeqB b.131.1.2 90368 c.62.1.4 90369 1bx4A 345 6.29e+00 1bx4A c.72.1.1 34935 1k0nA 241 6.41e+00 a.45.1.1 67953 c.47.1.5 67954 1qrqA 325 6.46e+00 1qrqA c.1.7.1 28667 1t7pA 698 6.99e+00 1t7pA c.55.3.5 33712 e.8.1.1 43005 1xc0A 33 8.20e+00 j.6.1.1 109542 1t0qA 498 8.49e+00 a.25.1.2 106220 1dfoA 417 8.51e+00 1bj4A c.67.1.4 34480 1tgoA 773 8.65e+00 1tgoA c.55.3.5 33721 e.8.1.1 43010 1s5lX 50 8.87e+00 1vk9A 151 9.16e+00 c.139.1.1 108640 1v9mA 323 9.93e+00 f.40.1.1 100543 1rwtA 232 1.02e+01 f.43.1.1 97992 1n2sA 299 1.06e+01 c.2.1.2 79857 1ebbA 202 1.07e+01 c.60.1.1 64900 1qhtA 775 1.07e+01 1tgoA c.55.3.5 33722 e.8.1.1 43011 3pbgA 468 1.11e+01 1e70M c.1.8.4 28951 1ll2A 333 1.13e+01 c.68.1.14 74005 1b4fA 82 1.16e+01 1b4fA a.60.1.2 17934 1pbgA 468 1.16e+01 1e70M c.1.8.4 28946 1h2eA 207 1.17e+01 c.60.1.1 70857 1b4fG 82 1.18e+01 1b4fA a.60.1.2 17940 1rzl 91 1.18e+01 1rzl a.52.1.1 17817 1m2eA 135 1.20e+01 c.23.1.5 78478 2bifA 469 1.22e+01 1bif c.37.1.7 31963 c.60.1.4 34009 1f0mA 82 1.23e+01 1b4fA a.60.1.2 17942 1zsyA 357 1.25e+01 1q52A 314 1.28e+01 c.14.1.3 95846 1bif 469 1.28e+01 1bif c.37.1.7 31961 c.60.1.4 34003 1z83A 196 1.51e+01 1de5A 426 1.60e+01 1de5A c.1.15.2 29402 1yaxA 153 1.61e+01 1f3iA 481 1.64e+01 1b7eA 2a3qA 170 1.67e+01 1yw0A 276 1.67e+01 1r12A 258 1.77e+01 e.4.1.1 96780 1ufbA 127 1.78e+01 a.24.16.3 99331 1yydA 357 1.88e+01 1mn1 357 1.90e+01 1arv a.93.1.1 18667 1fk5A 93 1.91e+01 1rzl a.52.1.1 59866 1mzm 93 1.91e+01 1rzl a.52.1.1 17814 1iv8A 720 1.92e+01 b.71.1.1 76842 c.1.8.1 76843 1mnp 357 1.94e+01 1arv a.93.1.1 18668 1sgg 75 1.94e+01 1b4fA a.60.1.2 17943 1ezvF 125 1.95e+01 1be3F f.27.1.1 59550 1a8rA 221 1.96e+01 1a8rA d.96.1.1 40587 3bifA 468 1.96e+01 1bif c.37.1.7 31962 c.60.1.4 34008 1y3nA 490 2.03e+01 1j5eB 256 2.03e+01 c.23.15.1 71543 1tv9A 335 2.15e+01 1xkpA 246 2.17e+01 1a17 166 2.20e+01 1a17 a.118.8.1 19206 2c5uA 375 2.21e+01 1x3kA 152 2.22e+01 1wucA 250 2.24e+01 1kb9G 125 2.26e+01 f.27.1.1 77322 1bc5A 269 2.27e+01 1af7 a.58.1.1 17929 c.66.1.8 34204 1tdpA 111 2.28e+01 a.29.8.1 106781 1me4A 215 2.31e+01 d.3.1.1 79023 1k0mA 241 2.32e+01 a.45.1.1 67949 c.47.1.5 67950 1wyuB 474 2.34e+01 1af7 274 2.38e+01 1af7 a.58.1.1 17928 c.66.1.8 34203 1f2aA 215 2.41e+01 1cs8A d.3.1.1 37040 1abmA 198 2.52e+01 1avmA 1qazA 351 2.53e+01 1qazA a.102.3.1 18848 1de6A 426 2.60e+01 1de5A c.1.15.2 29398 1n4oA 276 2.62e+01 e.3.1.1 91621 1fbtA 190 2.64e+01 1bif c.60.1.4 34004 1nh1A 330 2.69e+01 e.45.1.1 91871 1oya 400 2.71e+01 1oyc c.1.4.1 28604 1o7eA 276 2.75e+01 e.3.1.1 92622 2lhb 149 2.75e+01 2fal a.1.1.2 15597 1me3A 215 2.77e+01 d.3.1.1 79022 1uelB 48 2.86e+01 j.105.1.1 99266 1jmsA 381 2.87e+01 a.60.6.1 66889 a.60.12.1 75862 d.218.1.2 75863 1bpyA 335 2.87e+01 1bpyA a.60.6.1 17980 a.60.12.1 75819 d.218.1.2 75820 1cy5A 97 2.87e+01 1cy5A a.77.1.3 18430 1oyc 400 2.90e+01 1oyc c.1.4.1 28603 1l9hA 349 2.98e+01 f.13.1.2 73720 1afh 93 2.98e+01 1rzl a.52.1.1 17816 1lj8A 493 3.00e+01 a.100.1.9 90392 c.2.1.6 90393 1yruB 74 3.04e+01 1b4cA 92 3.05e+01 1b4cA a.39.1.2 17169 1to6A 371 3.05e+01 c.141.1.1 107170 1yrlA 491 3.07e+01 2kauA 100 3.10e+01 1ubpA d.8.1.1 37335 1xrdA 52 3.12e+01 1ash 150 3.12e+01 1ash a.1.1.2 15622 1w9yA 319 3.16e+01 1aim 215 3.19e+01 1cs8A d.3.1.1 37044 1d8wA 426 3.22e+01 1de5A c.1.15.2 29394 1k3kA 158 3.24e+01 f.1.4.1 72017 1hnnA 282 3.26e+01 c.66.1.15 65895 1vflA 356 3.27e+01 1ejxA 100 3.30e+01 d.8.1.1 83182 1fwcA 100 3.30e+01 1ubpA d.8.1.1 37331 1r0pA 312 3.31e+01 d.144.1.7 96734 1r30A 369 3.35e+01 c.1.28.1 96895 1tbfA 347 3.42e+01 a.211.1.2 106743 1xfxO 149 3.56e+01 1qgtA 149 3.62e+01 1qgtA a.62.1.1 18135 2ahjA 206 3.62e+01 2ahjA d.149.1.1 41772 1qqcA 773 3.69e+01 1tgoA c.55.3.5 33724 e.8.1.1 43013 1ulyA 192 3.72e+01 2a9uA 144 3.75e+01 2cz1A 206 3.77e+01 1dceA 567 3.79e+01 1dceA a.118.6.1 19191 b.7.4.1 23218 c.10.2.2 30867 1a9cA 221 3.79e+01 1a8rA d.96.1.1 40602 1usgA 346 3.83e+01 c.93.1.1 99864 1kdxB 28 3.84e+01 2ygsA 92 3.87e+01 1cy5A a.77.1.3 18431 1kb0A 677 3.92e+01 a.3.1.6 68378 b.70.1.1 68379 2bg1A 494 3.94e+01