# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1urqA 63 1.77e-01 h.1.15.1 107994 1rutX 188 7.09e-01 1enk 138 1.04e+00 2end a.18.1.1 16402 1enj 138 1.06e+00 2end a.18.1.1 16401 1eni 138 1.09e+00 2end a.18.1.1 16403 1mroC 247 1.31e+00 1mroC d.58.31.1 39437 1hbnC 248 1.37e+00 1mroC d.58.31.1 60902 2end 138 1.38e+00 2end a.18.1.1 16400 1vasA 137 1.54e+00 2end a.18.1.1 16404 1vqsA 116 1.54e+00 1zsxA 347 5.48e+00 1uelB 48 5.68e+00 j.105.1.1 99266 1yaxA 153 5.88e+00 1j9jA 247 6.23e+00 c.106.1.1 62758 1pm6A 72 6.65e+00 a.6.1.7 94894 1j9lA 247 7.12e+00 c.106.1.1 62762 2a6qA 86 7.58e+00 1exbA 332 7.74e+00 1qrqA c.1.7.1 28666 1nfiA 301 7.77e+00 1a3qA b.1.18.1 21942 b.2.5.3 22455 1ytfD 121 7.84e+00 1ytfD a.32.1.1 16998 b.56.1.1 27011 1nvpD 108 7.84e+00 a.32.1.1 92213 b.56.1.1 92214 2cqeA 98 8.41e+00 1vk9A 151 9.69e+00 c.139.1.1 108640 1nfiC 301 9.85e+00 b.1.18.1 21943 b.2.5.3 22456 1qrqA 325 1.03e+01 1qrqA c.1.7.1 28667 1nh2D 121 1.09e+01 a.32.1.1 91876 b.56.1.1 91877 1p9cA 45 1.11e+01 j.105.1.1 94386 1e0fI 57 1.11e+01 1e0fI g.3.15.2 44377 2c3vA 102 1.13e+01 1gd8A 118 1.20e+01 d.188.1.1 60445 1yx4A 132 1.28e+01 1nvpB 57 1.30e+01 a.32.1.1 92211 1ifa 158 1.31e+01 1ifa a.26.1.3 16892 2hfh 109 1.33e+01 2hfh a.4.5.14 16145 1t7pA 698 1.36e+01 1t7pA c.55.3.5 33712 e.8.1.1 43005 1rylA 167 1.48e+01 d.276.1.1 105124 2d00A 109 1.70e+01 1ash 150 1.81e+01 1ash a.1.1.2 15622 2a23A 82 1.84e+01 1or7A 194 1.92e+01 a.4.13.2 87332 a.177.1.1 87333 2a4hA 126 1.93e+01 1g8eA 116 1.97e+01 1g8eA a.145.1.1 60346 1yfbA 59 2.20e+01 1a97A 148 2.40e+01 1nulA c.61.1.1 34023 1s4bP 674 2.54e+01 d.92.1.5 105252 2lhb 149 2.58e+01 2fal a.1.1.2 15597 1v5mA 136 2.87e+01 b.55.1.1 108379 1z0rA 53 2.88e+01 1wu3I 161 2.92e+01 2aamA 309 2.92e+01 1im4A 221 2.92e+01 e.8.1.7 62581 2cu6A 103 3.02e+01 1zvdA 380 3.26e+01 1yruB 74 3.35e+01 1x9mA 698 3.40e+01 1hcc 59 3.43e+01 1hfh g.18.1.1 44820 2viuB 175 3.48e+01 1hgeB h.3.1.1 45676 3hmgB 175 3.49e+01 1hgeB h.3.1.1 45704 1dgrW 93 3.50e+01 1caxB 1n13B 113 3.54e+01 2fe7A 166 3.55e+01 1hgeB 175 3.61e+01 1hgeB h.3.1.1 45680 1wspA 84 3.70e+01 1aoy 78 3.73e+01 1aoy a.4.5.3 16087 1d3zA 76 3.75e+01 1ubi d.15.1.1 37592 1lbvA 252 3.85e+01 e.7.1.1 73813 1p9yA 121 3.87e+01 d.241.2.1 94402 1f0mA 82 3.91e+01 1b4fA a.60.1.2 17942 2ax6A 256 4.00e+01