# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1iq0A 592 9.14e-02 a.27.1.1 66257 c.26.1.1 66258 d.67.2.1 66259 2olbA 517 9.97e-02 1jevA c.94.1.1 35721 1jevA 517 1.02e-01 1jevA c.94.1.1 35720 1jetA 517 1.12e-01 1jevA c.94.1.1 35718 1iwhB 146 1.77e-01 1sig 339 6.05e-01 1sig a.112.1.1 19068 1fliA 98 2.05e+00 1awcA a.4.5.21 16160 1ass 159 4.43e+00 1a6dA c.8.5.2 30818 1asx 159 4.81e+00 1a6dA c.8.5.2 30821 1eupA 403 5.65e+00 1rom a.104.1.1 18967 1nksA 194 5.69e+00 1nksA c.37.1.1 31886 1babB 146 5.89e+00 1abwA a.1.1.2 15414 1dxtB 147 5.90e+00 1abwA a.1.1.2 15450 1fjgC 239 6.21e+00 1fjfC d.52.3.1 38831 d.53.1.1 38839 1irdB 146 7.41e+00 a.1.1.2 66287 1a6dA 545 8.42e+00 1a6dA a.129.1.2 19488 c.8.5.2 30819 d.56.1.2 38936 1cem 363 9.46e+00 1cem a.102.1.2 18826 1ci9A 392 9.75e+00 e.3.1.1 64767 1fhjB 146 1.05e+01 1abwA a.1.1.2 59838 1spgB 147 1.19e+01 1cg5B a.1.1.2 15588 1cyo 93 1.21e+01 1cyo d.120.1.1 41065 1j54A 186 1.23e+01 1hcnA 92 1.24e+01 1hcnA g.17.1.4 44809 1amuA 563 1.31e+01 1amuA e.23.1.1 43351 1oxa 403 1.37e+01 1f4tA a.104.1.1 18965 1jx4A 352 1.41e+01 e.8.1.5 67405 1kwfA 363 1.58e+01 1ajsA 412 1.65e+01 1ajsA c.67.1.1 34276 1kl7A 514 1.93e+01 1ci8A 392 1.94e+01 e.3.1.1 64765 1aisB 200 2.11e+01 1aisB a.74.1.2 18384 a.74.1.2 18385 1aep 161 2.20e+01 1aep a.63.1.1 18139 1im4A 221 2.20e+01 e.8.1.5 62581 1k2yX 463 2.42e+01 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 c.84.1.1 68066 1lqxA 82 2.50e+01 1i3dA 146 2.53e+01 a.1.1.2 61587 1udg 244 2.55e+01 3eugA c.18.1.1 31016 2spcA 107 2.57e+01 2spcA a.7.1.1 16311 1epuA 591 2.57e+01 1dn1A e.25.1.1 43358 1udh 244 2.58e+01 3eugA c.18.1.1 31015 1k8kA 418 2.59e+01 c.55.1.1 68305 c.55.1.1 68306 1necA 216 2.99e+01 1vfrA d.90.1.1 40249 1zid 268 3.04e+01 1eny c.2.1.2 29911 3pghA 587 3.12e+01 1cqeA a.93.1.2 18726 g.3.11.1 44269 1kyoC 385 3.13e+01 1ll1 590 3.16e+01 1lla a.85.1.1 18488 a.86.1.1 18499 b.1.1.5 21864 1g4mA 393 3.19e+01 b.1.1.5 65143 b.1.1.5 65144 1jenA 267 3.22e+01 1jenA 1cot 129 3.23e+01 1ycc a.3.1.1 15899 1ezvC 385 3.28e+01 1be3C f.2.1.8 59545 1avaA 403 3.30e+01 1jdc b.71.1.1 27797 c.1.8.1 28784 1a99A 344 3.46e+01 1pot c.94.1.1 35812 1dz7A 92 3.53e+01 1hcnA g.17.1.4 44815 1mgtA 174 3.60e+01 1mgtA a.4.2.1 16078 c.55.7.1 33753 1jkiA 533 3.82e+01