# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jetA 517 7.90e-02 1jevA c.94.1.1 35718 1jevA 517 7.99e-02 1jevA c.94.1.1 35720 2olbA 517 1.01e-01 1jevA c.94.1.1 35721 1iq0A 592 1.95e-01 a.27.1.1 66257 c.26.1.1 66258 d.67.2.1 66259 1sig 339 3.24e-01 1sig a.112.1.1 19068 1iwhB 146 4.12e-01 1fliA 98 1.37e+00 1awcA a.4.5.21 16160 1ass 159 2.21e+00 1a6dA c.8.5.2 30818 1asx 159 2.51e+00 1a6dA c.8.5.2 30821 1g0u1 266 3.59e+00 1ryp2 233 4.42e+00 1ryp2 2ctb 307 5.24e+00 1aye c.56.5.1 33803 1yme 309 6.00e+00 1aye c.56.5.1 33804 1j54A 186 6.36e+00 1necA 216 8.56e+00 1vfrA d.90.1.1 40249 1kl7A 514 8.79e+00 1j5eC 239 9.88e+00 1dxtB 147 1.02e+01 1abwA a.1.1.2 15450 1babB 146 1.03e+01 1abwA a.1.1.2 15414 1fjgC 239 1.07e+01 1fjfC d.52.3.1 38831 d.53.1.1 38839 2ctc 307 1.11e+01 1aye c.56.5.1 33802 1nksA 194 1.35e+01 1nksA c.37.1.1 31886 1gd5A 130 1.36e+01 1gd5A d.189.1.1 60439 1irdB 146 1.39e+01 a.1.1.2 66287 1hcnA 92 1.44e+01 1hcnA g.17.1.4 44809 1im4A 221 1.44e+01 e.8.1.5 62581 6cpa 307 1.45e+01 1aye c.56.5.1 33816 1eny 268 1.55e+01 1eny c.2.1.2 29910 1dz7A 92 1.56e+01 1hcnA g.17.1.4 44815 1zid 268 1.58e+01 1eny c.2.1.2 29911 1fhjB 146 1.82e+01 1abwA a.1.1.2 59838 1blu 82 1.85e+01 2fdn d.58.1.1 38948 1ib8A 164 1.86e+01 1ci8A 392 1.88e+01 e.3.1.1 64765 1ci9A 392 2.01e+01 e.3.1.1 64767 1udh 244 2.11e+01 3eugA c.18.1.1 31015 1ajsA 412 2.12e+01 1ajsA c.67.1.1 34276 1udg 244 2.19e+01 3eugA c.18.1.1 31016 2spcA 107 2.24e+01 2spcA a.7.1.1 16311 1fjgR 88 2.32e+01 1fjfR a.4.8.1 16252 1amuA 563 2.47e+01 1amuA e.23.1.1 43351 1ax8 146 2.51e+01 1ax8 a.26.1.1 16844 1g8yA 279 2.57e+01 1g8yA c.37.1.11 32302 1eupA 403 2.61e+01 1rom a.104.1.1 18967 1mgtA 174 2.69e+01 1mgtA a.4.2.1 16078 c.55.7.1 33753 1bob 320 2.70e+01 1bob d.108.1.1 40816 1cot 129 2.73e+01 1ycc a.3.1.1 15899 1cem 363 2.73e+01 1cem a.102.1.2 18826 1kwfA 363 2.73e+01 1spgB 147 2.76e+01 1cg5B a.1.1.2 15588 1lucB 324 2.82e+01 1lucA c.1.16.1 29548 1oxa 403 2.89e+01 1f4tA a.104.1.1 18965 1dhs 344 3.00e+01 1dhs c.31.1.1 31727 1cyo 93 3.11e+01 1cyo d.120.1.1 41065 1icrA 217 3.22e+01 1vfrA d.90.1.1 62274 1lqxA 82 3.22e+01 1c3wA 222 3.29e+01 1c3wA f.2.1.1 43405 1e69B 322 3.44e+01 1e69B c.37.1.12 32377 1amk 251 3.45e+01 1amk c.1.1.1 28503 1k2yX 463 3.56e+01 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 c.84.1.1 68066 1kewA 361 3.57e+01 c.2.1.2 68544 1g4mA 393 3.59e+01 b.1.1.5 65143 b.1.1.5 65144 1jkfA 533 3.62e+01 1lfpA 249 3.69e+01 1jkiA 533 3.69e+01 1a99A 344 3.72e+01 1pot c.94.1.1 35812 1jenA 267 3.74e+01 1jenA 1reqB 637 3.75e+01 1reqB c.1.19.1 29621 c.23.6.1 31248 1k8kA 418 3.83e+01 c.55.1.1 68305 c.55.1.1 68306 1g7dA 106 3.93e+01 1g7dA a.71.1.1 18318