# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1iq0A 592 4.27e-02 a.27.1.1 66257 c.26.1.1 66258 d.67.2.1 66259 1iwhB 146 8.03e-02 1jevA 517 1.29e-01 1jevA c.94.1.1 35720 2olbA 517 1.42e-01 1jevA c.94.1.1 35721 1jetA 517 1.87e-01 1jevA c.94.1.1 35718 1sig 339 2.68e-01 1sig a.112.1.1 19068 1ass 159 6.01e-01 1a6dA c.8.5.2 30818 1fliA 98 7.43e-01 1awcA a.4.5.21 16160 1asx 159 1.17e+00 1a6dA c.8.5.2 30821 1g0u1 266 2.22e+00 1jenA 267 3.13e+00 1jenA 1dxtB 147 3.22e+00 1abwA a.1.1.2 15450 1babB 146 3.23e+00 1abwA a.1.1.2 15414 1ryp2 233 3.65e+00 1ryp2 1kl7A 514 3.86e+00 1cyo 93 4.85e+00 1cyo d.120.1.1 41065 1gd5A 130 5.11e+00 1gd5A d.189.1.1 60439 1fhjB 146 6.08e+00 1abwA a.1.1.2 59838 1irdB 146 6.36e+00 a.1.1.2 66287 1im4A 221 6.99e+00 e.8.1.5 62581 2ctb 307 7.31e+00 1aye c.56.5.1 33803 1mgtA 174 7.36e+00 1mgtA a.4.2.1 16078 c.55.7.1 33753 1yme 309 7.37e+00 1aye c.56.5.1 33804 1jl0A 334 7.44e+00 1jenA d.156.1.1 63155 1eupA 403 7.45e+00 1rom a.104.1.1 18967 1necA 216 7.97e+00 1vfrA d.90.1.1 40249 1spgB 147 8.89e+00 1cg5B a.1.1.2 15588 1j5eC 239 8.92e+00 1a6dA 545 9.14e+00 1a6dA a.129.1.2 19488 c.8.5.2 30819 d.56.1.2 38936 2ctc 307 9.75e+00 1aye c.56.5.1 33802 1hw5A 210 1.04e+01 2cgpA a.4.5.4 16098 b.82.3.2 28137 1lucB 324 1.15e+01 1lucA c.1.16.1 29548 1ajsA 412 1.18e+01 1ajsA c.67.1.1 34276 1fjgC 239 1.19e+01 1fjfC d.52.3.1 38831 d.53.1.1 38839 1b0zA 445 1.21e+01 2pgi c.80.1.2 35309 2pgi 445 1.21e+01 2pgi c.80.1.2 35308 1dhs 344 1.29e+01 1dhs c.31.1.1 31727 1brlB 324 1.31e+01 1lucA c.1.16.1 29554 1i37A 260 1.35e+01 1a28A a.123.1.1 61583 1ci9A 392 1.38e+01 e.3.1.1 64767 1c7qA 445 1.38e+01 2pgi c.80.1.2 35307 2spcA 107 1.43e+01 2spcA a.7.1.1 16311 1aisB 200 1.44e+01 1aisB a.74.1.2 18384 a.74.1.2 18385 1cem 363 1.47e+01 1cem a.102.1.2 18826 1jkiA 533 1.50e+01 1kwfA 363 1.64e+01 1avaA 403 1.65e+01 1jdc b.71.1.1 27797 c.1.8.1 28784 1j54A 186 1.65e+01 1ez0A 510 1.67e+01 1eyyA c.82.1.1 35385 1amuA 563 1.68e+01 1amuA e.23.1.1 43351 1ib8A 164 1.70e+01 1f6dA 376 1.78e+01 1f6dA c.87.1.3 35467 1hcnA 92 1.86e+01 1hcnA g.17.1.4 44809 1g8yA 279 1.88e+01 1g8yA c.37.1.11 32302 1dz7A 92 1.89e+01 1hcnA g.17.1.4 44815 1h3nA 878 1.97e+01 6cpa 307 1.98e+01 1aye c.56.5.1 33816 1ci8A 392 2.04e+01 e.3.1.1 64765 1lqxA 82 2.07e+01 2at9 247 2.10e+01 1c3wA f.2.1.1 43427 1h5wA 309 2.15e+01 e.27.1.1 65635 1jfuA 186 2.18e+01 c.47.1.10 62940 1chuA 540 2.23e+01 1chuA a.7.3.1 16325 c.3.1.4 30424 d.168.1.1 42307 1smd 496 2.33e+01 1smd b.71.1.1 27768 c.1.8.1 28755 1a99A 344 2.39e+01 1pot c.94.1.1 35812 1hu4A 288 2.45e+01 1hu4A c.2.1.2 61268 1nksA 194 2.49e+01 1nksA c.37.1.1 31886 1i3dA 146 2.50e+01 a.1.1.2 61587 1b16A 254 2.51e+01 1b16A c.2.1.2 29875 1ldjA 760 2.51e+01 1a4uA 254 2.53e+01 1b16A c.2.1.2 29878 1jigA 146 2.55e+01 3pghA 587 2.58e+01 1cqeA a.93.1.2 18726 g.3.11.1 44269 1lfpA 249 2.58e+01 1k8kA 418 2.60e+01 c.55.1.1 68305 c.55.1.1 68306 1eyyA 510 2.63e+01 1eyyA c.82.1.1 35389 1jqhA 308 2.66e+01 1pymA 295 2.69e+01 1pymA c.1.12.4 29308 1udh 244 2.77e+01 3eugA c.18.1.1 31015 1i0hA 205 2.77e+01 1avmA a.2.11.1 15760 d.44.1.1 38685 2cgpA 210 2.82e+01 2cgpA a.4.5.4 16102 b.82.3.2 28141 1wdb 104 2.84e+01 1cyo d.120.1.1 41070 1zid 268 2.88e+01 1eny c.2.1.2 29911 1im5A 180 2.94e+01 c.33.1.2 66211 1csn 298 3.01e+01 1csn d.144.1.1 41664 1aep 161 3.03e+01 1aep a.63.1.1 18139 1udg 244 3.05e+01 3eugA c.18.1.1 31016 1pbv 195 3.06e+01 1pbv a.118.3.1 19179 1bob 320 3.09e+01 1bob d.108.1.1 40816 1ijgA 309 3.20e+01 1fouA e.27.1.1 62493 1icrA 217 3.23e+01 1vfrA d.90.1.1 62274 1jkfA 533 3.29e+01 1cot 129 3.36e+01 1ycc a.3.1.1 15899 1ceo 343 3.44e+01 1ceo c.1.8.3 28808 1reqD 637 3.45e+01 1reqB c.1.19.1 29623 c.23.6.1 31250 1eny 268 3.56e+01 1eny c.2.1.2 29910 1oxa 403 3.57e+01 1f4tA a.104.1.1 18965 1amk 251 3.65e+01 1amk c.1.1.1 28503 1fm2A 169 3.69e+01 1fm2A d.153.1.2 59877 1bi0 226 3.71e+01 1bi0 a.4.5.24 16202 a.76.1.1 18408 b.34.1.2 24453 1g7dA 106 3.83e+01 1g7dA a.71.1.1 18318 1fqiA 147 3.86e+01 1agrE a.91.1.1 18542 1pmi 440 3.98e+01 1pmi b.82.1.3 28114 1sur 215 3.98e+01 1sur c.26.2.2 31620