# List of top-scoring protein chains for t2k-100-30-alpha hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1iq0A 592 9.17e-02 a.27.1.1 66257 c.26.1.1 66258 d.67.2.1 66259 1sig 339 1.35e-01 1sig a.112.1.1 19068 1iwhB 146 1.73e-01 1jetA 517 7.64e-01 1jevA c.94.1.1 35718 2olbA 517 8.09e-01 1jevA c.94.1.1 35721 1jevA 517 8.36e-01 1jevA c.94.1.1 35720 1asx 159 1.23e+00 1a6dA c.8.5.2 30821 1ass 159 1.44e+00 1a6dA c.8.5.2 30818 1fliA 98 1.61e+00 1awcA a.4.5.21 16160 1hcnA 92 1.97e+00 1hcnA g.17.1.4 44809 1yme 309 2.52e+00 1aye c.56.5.1 33804 1g0u1 266 2.82e+00 1kl7A 514 3.22e+00 1wdb 104 3.44e+00 1cyo d.120.1.1 41070 2ctc 307 3.56e+00 1aye c.56.5.1 33802 1ryp2 233 3.63e+00 1ryp2 2ctb 307 4.06e+00 1aye c.56.5.1 33803 1dz7A 92 4.27e+00 1hcnA g.17.1.4 44815 1necA 216 4.83e+00 1vfrA d.90.1.1 40249 6cpa 307 5.86e+00 1aye c.56.5.1 33816 1sur 215 6.11e+00 1sur c.26.2.2 31620 1fhjB 146 6.51e+00 1abwA a.1.1.2 59838 1irdB 146 7.48e+00 a.1.1.2 66287 1dxtB 147 7.76e+00 1abwA a.1.1.2 15450 1babB 146 7.78e+00 1abwA a.1.1.2 15414 2spcA 107 8.04e+00 2spcA a.7.1.1 16311 1e69B 322 8.60e+00 1e69B c.37.1.12 32377 1chuA 540 8.75e+00 1chuA a.7.3.1 16325 c.3.1.4 30424 d.168.1.1 42307 1mgtA 174 8.90e+00 1mgtA a.4.2.1 16078 c.55.7.1 33753 1fjgR 88 8.99e+00 1fjfR a.4.8.1 16252 1a6dA 545 9.01e+00 1a6dA a.129.1.2 19488 c.8.5.2 30819 d.56.1.2 38936 1blu 82 9.33e+00 2fdn d.58.1.1 38948 1im4A 221 9.60e+00 e.8.1.5 62581 1icrA 217 1.05e+01 1vfrA d.90.1.1 62274 1dmtA 696 1.06e+01 1dmtA d.92.1.4 40296 1c3wA 222 1.08e+01 1c3wA f.2.1.1 43405 1aep 161 1.09e+01 1aep a.63.1.1 18139 1spgB 147 1.14e+01 1cg5B a.1.1.2 15588 1smd 496 1.23e+01 1smd b.71.1.1 27768 c.1.8.1 28755 1in6A 334 1.24e+01 1hqcA a.4.5.11 62601 c.37.1.13 62602 1bob 320 1.40e+01 1bob d.108.1.1 40816 1l7vA 326 1.41e+01 1fjgC 239 1.47e+01 1fjfC d.52.3.1 38831 d.53.1.1 38839 1j54A 186 1.48e+01 1b3qA 379 1.59e+01 1b3qA a.30.2.1 16993 b.40.7.1 25454 d.122.1.3 41112 1jenA 267 1.63e+01 1jenA 1m0kA 262 1.64e+01 1kxlA 199 1.64e+01 1jfkA 134 1.75e+01 a.39.1.5 66639 1i4jA 110 1.80e+01 1k2yX 463 1.87e+01 c.84.1.1 68063 c.84.1.1 68064 c.84.1.1 68065 c.84.1.1 68066 1cby 259 1.88e+01 1cby d.103.1.1 40705 1amuA 563 1.95e+01 1amuA e.23.1.1 43351 1cyo 93 2.00e+01 1cyo d.120.1.1 41065 1pszA 303 2.02e+01 1toaA c.92.2.2 35600 2bds 43 2.08e+01 2bds g.9.1.1 44595 1hx0A 496 2.20e+01 b.71.1.1 61346 c.1.8.1 61347 1e5eA 404 2.24e+01 1ibjA c.67.1.3 59265 1ib8A 164 2.31e+01 1h2aL 567 2.35e+01 1h2rL e.18.1.1 43299 1i3dA 146 2.42e+01 a.1.1.2 61587 1udg 244 2.43e+01 3eugA c.18.1.1 31016 1seiA 130 2.48e+01 1seiA d.140.1.1 41463 1jfuA 186 2.48e+01 c.47.1.10 62940 1aqzB 149 2.51e+01 1aqzA d.1.1.1 36239 1jx4A 352 2.55e+01 e.8.1.5 67405 1csn 298 2.63e+01 1csn d.144.1.1 41664 1bds 43 2.64e+01 2bds g.9.1.1 44596 1aqzA 149 2.65e+01 1aqzA d.1.1.1 36238 1amk 251 2.74e+01 1amk c.1.1.1 28503 1udh 244 2.75e+01 3eugA c.18.1.1 31015 1lfpA 249 2.79e+01 1cot 129 2.79e+01 1ycc a.3.1.1 15899 12asA 330 2.80e+01 12asA d.104.1.1 40783 1lq7A 67 2.88e+01 1kgbA 231 3.08e+01 f.2.1.1 68581 1qhkA 47 3.10e+01 1qhkA d.100.1.2 40694 1qvaA 223 3.21e+01 1qvaA c.37.1.13 32411 1kmdA 117 3.26e+01 1zid 268 3.28e+01 1eny c.2.1.2 29911 1bxeA 113 3.38e+01 1bxeA d.55.1.1 38898 1j5eC 239 3.41e+01 2at9 247 3.47e+01 1c3wA f.2.1.1 43427 1dnlA 199 3.48e+01 1ci0A b.45.1.1 25753 1ajsA 412 3.48e+01 1ajsA c.67.1.1 34276 1aj0 282 3.52e+01 1aj2 c.1.21.1 29667 1ci8A 392 3.55e+01 e.3.1.1 64765 1i0hA 205 3.62e+01 1avmA a.2.11.1 15760 d.44.1.1 38685 1a99A 344 3.63e+01 1pot c.94.1.1 35812 1jsdB 176 3.67e+01 h.3.1.1 63259 1g4mA 393 3.67e+01 b.1.1.5 65143 b.1.1.5 65144 1jl0A 334 3.68e+01 1jenA d.156.1.1 63155 1qgwC 177 3.73e+01 1qgwC a.1.1.3 15673 1cec 343 3.81e+01 1ceo c.1.8.3 28809 1g99A 408 3.85e+01 1g99A c.55.1.2 33457 c.55.1.2 33458 1lay 256 3.94e+01 1lay b.57.1.1 27014 1spgA 144 3.97e+01 1abwA a.1.1.2 15409