Best Alignments for YGR230W

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1dszA/YGR230W-1dszA-local-str-1.5-adpstyle5.a2m 5.8467e+006.9712e-01 2nllB g.39.1.2
1ihuA/YGR230W-1ihuA-global-str-1.5-adpstyle5.a2m 4.4213e+008.7354e-01 c.37.1.10
1f48A/YGR230W-1f48A-global-str-1.5-adpstyle5.a2m 7.0990e+001.0001e+00 1f48A c.37.1.10
1nzyA/YGR230W-1nzyA-global-str-1.5-adpstyle5.a2m 7.6740e+001.0251e+00 1nzyA c.14.1.3
1dszA/YGR230W-1dszA-global-str-1.5-adpstyle5.a2m 5.8467e+002.1068e+00 2nllB g.39.1.2
1dszA/2nllB-YGR230W-fssp-local-adpstyle5.a2m 5.8467e+002.3468e+00 2nllB g.39.1.2
1f48A/1f48A-YGR230W-fssp-global-adpstyle5.a2m 7.0990e+002.5012e+00 1f48A c.37.1.10
1dszA/2nllB-YGR230W-fssp-global-adpstyle5.a2m 5.8467e+002.5500e+00 2nllB g.39.1.2
1f48A/1f48A-YGR230W-fssp-local-adpstyle5.a2m 7.0990e+002.6170e+00 1f48A c.37.1.10
1nzyA/1nzyA-YGR230W-fssp-local-adpstyle5.a2m 7.6740e+002.8417e+00 1nzyA c.14.1.3
1ihuA/YGR230W-1ihuA-local-alpha-0.3-adpstyle5.a2m 4.4213e+003.0322e+00 c.37.1.10
1nzyA/1nzyA-YGR230W-fssp-global-adpstyle5.a2m 7.6740e+003.1470e+00 1nzyA c.14.1.3
1dszA/YGR230W-1dszA-local-str-0.3-adpstyle5.a2m 5.8467e+003.1610e+00 2nllB g.39.1.2
1ihuA/YGR230W-1ihuA-local-dssp-ebghstl-0.3-adpstyle5.a2m 4.4213e+003.2975e+00 c.37.1.10
1dszA/YGR230W-1dszA-local-dssp-ebghstl-0.3-adpstyle5.a2m 5.8467e+003.5170e+00 2nllB g.39.1.2
1krcC/1ubpC-YGR230W-fssp-global-adpstyle5.a2m 1.9069e+014.0263e+00 1ubpC c.1.9.2
b.92.1.1
1ihuA/YGR230W-1ihuA-local-stride-ebghtl-0.3-adpstyle5.a2m 4.4213e+004.1165e+00 c.37.1.10
1dszA/YGR230W-1dszA-local-alpha-0.3-adpstyle5.a2m 5.8467e+004.2658e+00 2nllB g.39.1.2
1dszA/YGR230W-1dszA-local-stride-ebghtl-0.3-adpstyle5.a2m 5.8467e+004.3776e+00 2nllB g.39.1.2
1f48A/YGR230W-1f48A-local-alpha-0.3-adpstyle5.a2m 7.0990e+004.4859e+00 1f48A c.37.1.10
1nzyA/YGR230W-1nzyA-local-str-1.5-adpstyle5.a2m 7.6740e+004.6297e+00 1nzyA c.14.1.3
1ihuA/YGR230W-1ihuA-global-dssp-ebghstl-0.3-adpstyle5.a2m 4.4213e+004.7326e+00 c.37.1.10
1ihuA/YGR230W-1ihuA-local-str-0.3-adpstyle5.a2m 4.4213e+004.8165e+00 c.37.1.10
1f48A/YGR230W-1f48A-local-dssp-ebghstl-0.3-adpstyle5.a2m 7.0990e+004.8298e+00 1f48A c.37.1.10
1krcC/1ubpC-YGR230W-fssp-local-adpstyle5.a2m 1.9069e+014.9204e+00 1ubpC c.1.9.2
b.92.1.1
1nzyA/YGR230W-1nzyA-local-str-0.3-adpstyle5.a2m 7.6740e+005.2129e+00 1nzyA c.14.1.3
1nzyB/1nzyA-YGR230W-fssp-local-adpstyle5.a2m 1.7054e+015.5281e+00 1nzyA c.14.1.3
1ihuA/YGR230W-1ihuA-local-str-1.5-adpstyle5.a2m 4.4213e+005.5765e+00 c.37.1.10
1f48A/YGR230W-1f48A-local-stride-ebghtl-0.3-adpstyle5.a2m 7.0990e+005.8487e+00 1f48A c.37.1.10
1nzyA/YGR230W-1nzyA-local-dssp-ebghstl-0.3-adpstyle5.a2m 7.6740e+005.8844e+00 1nzyA c.14.1.3
1dszA/YGR230W-1dszA-global-str-0.3-adpstyle5.a2m 5.8467e+005.9615e+00 2nllB g.39.1.2
7fabL/YGR230W-7fabL-global-adpstyle5.a2m 2.7608e+016.0106e+00 8fabA b.1.1.1
b.1.1.2
7fabL/YGR230W-7fabL-global-adpstyle1.a2m 2.7608e+016.0106e+00 8fabA b.1.1.1
b.1.1.2
1nzyB/1nzyA-YGR230W-fssp-global-adpstyle5.a2m 1.7054e+016.1221e+00 1nzyA c.14.1.3
1dszA/YGR230W-1dszA-global-dssp-ebghstl-0.3-adpstyle5.a2m 5.8467e+006.2131e+00 2nllB g.39.1.2
1ihuA/YGR230W-1ihuA-global-alpha-0.3-adpstyle5.a2m 4.4213e+006.4292e+00 c.37.1.10
1f48A/YGR230W-1f48A-global-dssp-ebghstl-0.3-adpstyle5.a2m 7.0990e+006.8599e+00 1f48A c.37.1.10
1dfvB/1nglA-YGR230W-fssp-global-adpstyle5.a2m 3.0190e+016.8762e+00 1nglA b.60.1.1
1ihuA/YGR230W-1ihuA-global-stride-ebghtl-0.3-adpstyle5.a2m 4.4213e+006.8823e+00 c.37.1.10
1dszA/YGR230W-1dszA-global-alpha-0.3-adpstyle5.a2m 5.8467e+006.8930e+00 2nllB g.39.1.2
1nzyA/YGR230W-1nzyA-global-dssp-ebghstl-0.3-adpstyle5.a2m 7.6740e+007.0593e+00 1nzyA c.14.1.3
1nzyA/YGR230W-1nzyA-global-str-0.3-adpstyle5.a2m 7.6740e+007.1090e+00 1nzyA c.14.1.3
1nzyA/YGR230W-1nzyA-local-stride-ebghtl-0.3-adpstyle5.a2m 7.6740e+007.1594e+00 1nzyA c.14.1.3
1f48A/YGR230W-1f48A-local-str-0.3-adpstyle5.a2m 7.0990e+007.5287e+00 1f48A c.37.1.10
7fabL/8fabA-YGR230W-fssp-local-adpstyle5.a2m 2.7608e+017.5965e+00 8fabA b.1.1.1
b.1.1.2
1nzyA/YGR230W-1nzyA-local-alpha-0.3-adpstyle5.a2m 7.6740e+007.7466e+00 1nzyA c.14.1.3
7fabL/8fabA-YGR230W-fssp-global-adpstyle5.a2m 2.7608e+018.8544e+00 8fabA b.1.1.1
b.1.1.2
1ihuA/YGR230W-1ihuA-global-str-0.3-adpstyle5.a2m 4.4213e+008.8789e+00 c.37.1.10
1f48A/YGR230W-1f48A-global-alpha-0.3-adpstyle5.a2m 7.0990e+009.0953e+00 1f48A c.37.1.10
1dfvB/1nglA-YGR230W-fssp-local-adpstyle5.a2m 3.0190e+019.1142e+00 1nglA b.60.1.1
1dszA/YGR230W-1dszA-global-stride-ebghtl-0.3-adpstyle5.a2m 5.8467e+009.2753e+00 2nllB g.39.1.2
1f48A/YGR230W-1f48A-global-stride-ebghtl-0.3-adpstyle5.a2m 7.0990e+009.3476e+00 1f48A c.37.1.10
1ihuA/YGR230W-1ihuA-local-adpstyle1.a2m 4.4213e+009.3560e+00 c.37.1.10
1ihuA/YGR230W-1ihuA-local-adpstyle5.a2m 4.4213e+009.3560e+00 c.37.1.10
1nzyA/YGR230W-1nzyA-local-adpstyle5.a2m 7.6740e+009.9289e+00 1nzyA c.14.1.3
1nzyA/YGR230W-1nzyA-local-adpstyle1.a2m 7.6740e+009.9289e+00 1nzyA c.14.1.3
1ihuA/YGR230W-1ihuA-global-adpstyle5.a2m 4.4213e+009.9432e+00 c.37.1.10
1ihuA/YGR230W-1ihuA-global-adpstyle1.a2m 4.4213e+009.9432e+00 c.37.1.10
1dszA/YGR230W-1dszA-simplesw-adpstyle1.a2m 5.8467e+001.0595e+01 2nllB g.39.1.2
1dszA/YGR230W-1dszA-simplesw-adpstyle5.a2m 5.8467e+001.0595e+01 2nllB g.39.1.2
1dszA/YGR230W-1dszA-local-adpstyle5.a2m 5.8467e+001.0991e+01 2nllB g.39.1.2
1dszA/YGR230W-1dszA-local-adpstyle1.a2m 5.8467e+001.0991e+01 2nllB g.39.1.2
1f48A/YGR230W-1f48A-global-str-0.3-adpstyle5.a2m 7.0990e+001.1259e+01 1f48A c.37.1.10
1ihuA/1ihuA-YGR230W-local-adpstyle5.a2m 4.4213e+001.3241e+01 c.37.1.10
1ihuA/1ihuA-YGR230W-local-adpstyle1.a2m 4.4213e+001.3241e+01 c.37.1.10
1nzyA/YGR230W-1nzyA-global-alpha-0.3-adpstyle5.a2m 7.6740e+001.3279e+01 1nzyA c.14.1.3
1f48A/YGR230W-1f48A-local-str-1.5-adpstyle5.a2m 7.0990e+001.3322e+01 1f48A c.37.1.10
1ihuA/YGR230W-1ihuA-simplesw-adpstyle1.a2m 4.4213e+001.3441e+01 c.37.1.10
1ihuA/YGR230W-1ihuA-simplesw-adpstyle5.a2m 4.4213e+001.3441e+01 c.37.1.10
1f48A/YGR230W-1f48A-local-adpstyle1.a2m 7.0990e+001.3882e+01 1f48A c.37.1.10
1f48A/YGR230W-1f48A-local-adpstyle5.a2m 7.0990e+001.3882e+01 1f48A c.37.1.10
1nzyA/YGR230W-1nzyA-global-stride-ebghtl-0.3-adpstyle5.a2m 7.6740e+001.4058e+01 1nzyA c.14.1.3
1ihuA/1ihuA-YGR230W-global-adpstyle5.a2m 4.4213e+001.4678e+01 c.37.1.10
1ihuA/1ihuA-YGR230W-global-adpstyle1.a2m 4.4213e+001.4678e+01 c.37.1.10
1f48A/YGR230W-1f48A-global-adpstyle1.a2m 7.0990e+001.4754e+01 1f48A c.37.1.10
1f48A/YGR230W-1f48A-global-adpstyle5.a2m 7.0990e+001.4754e+01 1f48A c.37.1.10
1f48A/1f48A-YGR230W-global-adpstyle1.a2m 7.0990e+001.5355e+01 1f48A c.37.1.10
1f48A/1f48A-YGR230W-global-adpstyle5.a2m 7.0990e+001.5355e+01 1f48A c.37.1.10
1jhwA/YGR230W-1jhwA-local-adpstyle1.a2m 1.3781e+011.5416e+01
1jhwA/YGR230W-1jhwA-local-adpstyle5.a2m 1.3781e+011.5416e+01
1dszA/YGR230W-1dszA-global-adpstyle5.a2m 5.8467e+001.6957e+01 2nllB g.39.1.2
1dszA/YGR230W-1dszA-global-adpstyle1.a2m 5.8467e+001.6957e+01 2nllB g.39.1.2
1dszA/1dszA-YGR230W-local-adpstyle1.a2m 5.8467e+001.7348e+01 2nllB g.39.1.2
1dszA/1dszA-YGR230W-local-adpstyle5.a2m 5.8467e+001.7348e+01 2nllB g.39.1.2
1jxzB/YGR230W-1jxzB-local-adpstyle1.a2m 1.5815e+011.7860e+01 c.14.1.3
1jxzB/YGR230W-1jxzB-local-adpstyle5.a2m 1.5815e+011.7860e+01 c.14.1.3
1dszA/1dszA-YGR230W-global-adpstyle5.a2m 5.8467e+001.7872e+01 2nllB g.39.1.2
1dszA/1dszA-YGR230W-global-adpstyle1.a2m 5.8467e+001.7872e+01 2nllB g.39.1.2
1nzyB/YGR230W-1nzyB-local-adpstyle5.a2m 1.7054e+011.9351e+01 1nzyA c.14.1.3
1nzyB/YGR230W-1nzyB-local-adpstyle1.a2m 1.7054e+011.9351e+01 1nzyA c.14.1.3
1nzyA/1nzyA-YGR230W-global-adpstyle1.a2m 7.6740e+001.9720e+01 1nzyA c.14.1.3
1nzyA/1nzyA-YGR230W-global-adpstyle5.a2m 7.6740e+001.9720e+01 1nzyA c.14.1.3
1f48A/YGR230W-1f48A-simplesw-adpstyle5.a2m 7.0990e+001.9944e+01 1f48A c.37.1.10
1f48A/YGR230W-1f48A-simplesw-adpstyle1.a2m 7.0990e+001.9944e+01 1f48A c.37.1.10
1f48A/1f48A-YGR230W-local-adpstyle5.a2m 7.0990e+002.0316e+01 1f48A c.37.1.10
1f48A/1f48A-YGR230W-local-adpstyle1.a2m 7.0990e+002.0316e+01 1f48A c.37.1.10
1nzyA/YGR230W-1nzyA-simplesw-adpstyle1.a2m 7.6740e+002.0562e+01 1nzyA c.14.1.3
1nzyA/YGR230W-1nzyA-simplesw-adpstyle5.a2m 7.6740e+002.0562e+01 1nzyA c.14.1.3
1jhwA/YGR230W-1jhwA-global-adpstyle1.a2m 1.3781e+012.0672e+01
1jhwA/YGR230W-1jhwA-global-adpstyle5.a2m 1.3781e+012.0672e+01

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001