# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ihuA 589 3.54e-01 c.37.1.10 62394 c.37.1.10 62395 1f48A 589 4.83e-01 1f48A c.37.1.10 32280 c.37.1.10 32281 1dszA 86 1.05e+00 2nllB g.39.1.2 45129 1hyqA 263 1.50e+00 1hyqA c.37.1.10 61412 1bza 262 1.85e+00 1btl e.3.1.1 42701 1nzyA 269 2.90e+00 1nzyA c.14.1.3 30903 1gnwA 211 2.98e+00 1gnwA a.45.1.1 17727 c.47.1.5 33021 1gw5B 591 3.49e+00 1hmcA 148 3.72e+00 1hmcB a.26.1.2 16867 1gdtA 183 4.05e+00 2rslA a.4.1.2 16021 c.53.1.1 33348 1a5t 334 4.78e+00 1a5t a.80.1.1 18450 c.37.1.13 32423 1g5pA 289 5.31e+00 1cp2A c.37.1.10 32253 1pkn 530 5.40e+00 1a49A b.58.1.1 27042 c.1.12.1 29271 c.49.1.1 33125 1a49A 530 6.22e+00 1a49A b.58.1.1 27026 c.1.12.1 29255 c.49.1.1 33109 1fyeA 229 6.95e+00 1fyeA c.23.16.4 31477 1fy2A 229 6.96e+00 1fyeA c.23.16.4 31478 1hmcB 148 7.16e+00 1hmcB a.26.1.2 16868 1bsg 266 8.85e+00 1btl e.3.1.1 42729 1fp6A 289 9.06e+00 1cp2A c.37.1.10 32243 1kwmA 402 9.08e+00 1k8kE 178 9.29e+00 a.148.1.1 68311 1volA 204 1.00e+01 1tfb a.74.1.2 18370 a.74.1.2 18371 1h5qA 265 1.04e+01 1cydA c.2.1.2 60643 1k92A 455 1.07e+01 c.26.2.1 68325 d.210.1.1 68326 1hx0A 496 1.10e+01 b.71.1.1 61346 c.1.8.1 61347 1hra 81 1.13e+01 2nllB g.39.1.2 45130 1lct 333 1.15e+01 1cb6A c.94.1.2 35836 1a32 88 1.27e+01 1a32 a.16.1.2 16384 1binA 143 1.31e+01 2gdm a.1.1.2 15231 1iieA 75 1.32e+01 1iieA a.109.1.1 19039 1qk8A 146 1.38e+01 1ewxA c.47.1.10 33061 1ep3A 311 1.44e+01 2dorA c.1.4.1 28597 2ay1A 394 1.48e+01 1ajsA c.67.1.1 34357 1eia 207 1.50e+01 1eia a.28.3.1 16951 a.73.1.1 18331 1hstA 90 1.53e+01 1hstA a.4.5.13 16140 1fslA 143 1.54e+01 2gdm a.1.1.2 15229 1tafB 70 1.57e+01 1tafB a.22.1.3 16482 1ehyA 294 1.67e+01 1ehyA c.69.1.11 34693 1vpt 348 1.75e+01 3mag c.66.1.9 34207 1nipA 289 1.76e+01 1cp2A c.37.1.10 32263 1j5vA 351 1.76e+01 2eiaB 206 1.77e+01 1eia a.28.3.1 16950 a.73.1.1 18330 1vid 221 1.85e+01 1vid c.66.1.1 34178 2fsp 124 1.85e+01 1dz3A c.23.1.1 31119 1jsmB 176 1.87e+01 h.3.1.1 63265 1k3eA 156 1.94e+01 d.198.1.1 68103 1a8y 367 1.96e+01 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1g4wR 383 1.97e+01 1g4uS a.24.11.1 16644 c.45.1.2 32692 1hr6A 475 2.00e+01 1hr6A d.185.1.1 61164 d.185.1.1 61165 2aaa 484 2.12e+01 7taa b.71.1.1 27777 c.1.8.1 28764 1jli 112 2.13e+01 1jli a.26.1.2 16884 1lxtA 561 2.30e+01 3pmgA c.84.1.1 35432 c.84.1.1 35433 c.84.1.1 35434 d.129.2.1 41309 1g6zA 70 2.36e+01 1g6zA d.9.2.2 60321 3pmgA 561 2.39e+01 3pmgA c.84.1.1 35408 c.84.1.1 35409 c.84.1.1 35410 d.129.2.1 41301 1ekjA 221 2.39e+01 1ekjB c.53.2.1 33364 1ekjB 221 2.40e+01 1ekjB c.53.2.1 33365 4tmkA 213 2.42e+01 5tmpA c.37.1.1 31930 1qgeE 97 2.46e+01 1cvl 1bn7A 294 2.47e+01 1bn6A c.69.1.8 34677 1fbaA 361 2.47e+01 1fbaA c.1.10.1 29120 1bob 320 2.52e+01 1bob d.108.1.1 40816 2bc2A 227 2.53e+01 1a7tA d.157.1.1 42031 2bc2B 227 2.57e+01 1a7tA d.157.1.1 42032 1cd0A 111 2.68e+01 8fabA b.1.1.1 20559 1hzoA 271 2.73e+01 2rslA 140 2.77e+01 2rslA c.53.1.1 33345 1opp 38 2.78e+01 1opp j.39.1.1 46292 1f24A 402 2.82e+01 1rom a.104.1.1 18953 1ddcA 247 2.85e+01 1ddcA a.138.1.3 19684 1bu8A 452 2.86e+01 1gpl b.12.1.2 23647 c.69.1.19 34795 1jfbA 404 2.90e+01 a.104.1.1 66624 5tmpA 213 2.91e+01 5tmpA c.37.1.1 31931 2minA 491 2.99e+01 1qguA c.92.2.3 35609 1ewxA 146 3.01e+01 1ewxA c.47.1.10 33062 1fpqA 372 3.04e+01 1fpqA a.4.5.29 59947 c.66.1.12 59948 1c5kA 439 3.05e+01 1crzA b.68.4.1 27630 c.51.2.1 33212 1crzA 403 3.11e+01 1crzA b.68.4.1 27629 c.51.2.1 33211 1htwA 158 3.16e+01 1g5cA 170 3.19e+01 1g5cA c.53.2.1 60264 1bn6A 294 3.29e+01 1bn6A c.69.1.8 34678 1dxrL 273 3.32e+01 6prcL f.2.1.2 43431 6prcL 273 3.35e+01 6prcL f.2.1.2 43434 1pmi 440 3.59e+01 1pmi b.82.1.3 28114 1ez1A 392 3.64e+01 1ez1A b.84.2.1 28248 c.30.1.1 31655 d.142.1.2 41500 1db3A 372 3.66e+01 1db3A c.2.1.2 29813 1gjsA 65 3.68e+01 1gab a.8.1.2 60578 1e8nA 710 3.73e+01 1qfmA b.69.7.1 27675 c.69.1.4 34643 1eyzA 392 3.80e+01 1ez1A b.84.2.1 28246 c.30.1.1 31653 d.142.1.2 41498 1qfmA 710 3.81e+01 1qfmA b.69.7.1 27673 c.69.1.4 34641 3minC 491 3.85e+01 1qguA c.92.2.3 35607 1ash 150 3.91e+01 1ash a.1.1.2 15622 1qpcA 279 3.91e+01 1fgkA d.144.1.2 41685 1dl2A 511 3.95e+01 1dl2A a.102.2.1 18844 1thfD 253 3.95e+01 1thfD c.1.2.1 28535 2lfb 100 3.98e+01 1lfb a.4.1.1 15990