# List of top-scoring protein chains for t2k-100-30-str hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dszA 86 1.14e-01 2nllB g.39.1.2 45129 1nzyA 269 3.49e-01 1nzyA c.14.1.3 30903 1kwmA 402 3.81e-01 1k3eA 156 7.14e-01 d.198.1.1 68103 1ihuA 589 8.89e-01 c.37.1.10 62394 c.37.1.10 62395 1gdtA 183 9.24e-01 2rslA a.4.1.2 16021 c.53.1.1 33348 1hra 81 1.10e+00 2nllB g.39.1.2 45130 1f48A 589 1.89e+00 1f48A c.37.1.10 32280 c.37.1.10 32281 3pmgA 561 1.98e+00 3pmgA c.84.1.1 35408 c.84.1.1 35409 c.84.1.1 35410 d.129.2.1 41301 1bza 262 4.38e+00 1btl e.3.1.1 42701 1sesA 421 7.83e+00 1sesA a.2.7.1 15710 d.104.1.1 40710 1kfiA 572 8.60e+00 c.84.1.1 68555 c.84.1.1 68556 c.84.1.1 68557 d.129.2.1 68558 1lxtA 561 8.99e+00 3pmgA c.84.1.1 35432 c.84.1.1 35433 c.84.1.1 35434 d.129.2.1 41309 1pysB 785 9.23e+00 1pysB a.6.1.1 16299 a.6.1.1 16300 b.40.4.4 25311 d.58.13.1 39310 d.104.1.1 40779 d.138.1.1 41455 1cd0A 111 1.03e+01 8fabA b.1.1.1 20559 1g4wR 383 1.09e+01 1g4uS a.24.11.1 16644 c.45.1.2 32692 1bsg 266 1.09e+01 1btl e.3.1.1 42729 1b7yB 785 1.19e+01 1pysB a.6.1.1 16301 a.6.1.1 16302 b.40.4.4 25312 d.58.13.1 39311 d.104.1.1 40780 d.138.1.1 41456 1iq4A 179 1.32e+01 1iq4A d.77.1.1 62641 1jyoA 130 1.35e+01 d.198.1.1 67483 2bpa2 175 1.36e+01 2bpa2 1hw7A 255 1.37e+01 1i7fA d.193.1.1 61297 1aky 221 1.38e+01 1zin c.37.1.1 31896 g.41.2.1 45197 1kktA 511 1.41e+01 a.102.2.1 68687 1iieA 75 1.47e+01 1iieA a.109.1.1 19039 1ekjA 221 1.59e+01 1ekjB c.53.2.1 33364 2dtr 226 1.60e+01 1bi0 a.4.5.24 16193 a.76.1.1 18399 b.34.1.2 24450 1volA 204 1.60e+01 1tfb a.74.1.2 18370 a.74.1.2 18371 1bi0 226 1.70e+01 1bi0 a.4.5.24 16202 a.76.1.1 18408 b.34.1.2 24453 1erp 38 1.86e+01 2erl a.10.1.1 16363 2ay1A 394 1.98e+01 1ajsA c.67.1.1 34357 1g6zA 70 2.00e+01 1g6zA d.9.2.2 60321 2rslA 140 2.08e+01 2rslA c.53.1.1 33345 1i7fA 292 2.14e+01 1i7fA d.193.1.1 61888 1exbA 332 2.15e+01 1qrqA c.1.7.1 28666 1fslA 143 2.15e+01 2gdm a.1.1.2 15229 1c4zA 358 2.19e+01 1c4zA d.148.1.1 41766 1binA 143 2.32e+01 2gdm a.1.1.2 15231 1jksA 294 2.33e+01 1b0zA 445 2.35e+01 2pgi c.80.1.2 35309 2pgi 445 2.35e+01 2pgi c.80.1.2 35308 1tafB 70 2.52e+01 1tafB a.22.1.3 16482 1gnwA 211 2.56e+01 1gnwA a.45.1.1 17727 c.47.1.5 33021 1gyfA 62 2.56e+01 1gyfA d.76.1.1 39749 1ekjB 221 2.58e+01 1ekjB c.53.2.1 33365 1b8gA 429 2.59e+01 1b8gA c.67.1.4 34499 1kt9A 138 2.63e+01 1c7qA 445 2.72e+01 2pgi c.80.1.2 35307 1ftrA 296 2.87e+01 1ftrA d.58.33.1 39485 d.58.33.1 39486 1fpqA 372 2.87e+01 1fpqA a.4.5.29 59947 c.66.1.12 59948 1mhyB 395 2.96e+01 1mtyB a.25.1.2 16781 4pgaA 337 3.03e+01 4pgaA c.88.1.1 35565 1hc7A 477 3.04e+01 1hc7A c.51.1.1 60938 d.104.1.1 60939 g.56.1.1 60940 1qrqA 325 3.15e+01 1qrqA c.1.7.1 28667 1g4uS 383 3.21e+01 1g4uS a.24.11.1 16643 c.45.1.2 32691 1eia 207 3.27e+01 1eia a.28.3.1 16951 a.73.1.1 18331 1d5tA 433 3.28e+01 1gnd c.3.1.3 30422 d.16.1.6 37986 1ddnA 226 3.34e+01 1bi0 a.4.5.24 16207 a.76.1.1 18413 1fwp 139 3.46e+01 1eayC d.58.24.1 39396 1hr6A 475 3.67e+01 1hr6A d.185.1.1 61164 d.185.1.1 61165 1a5t 334 3.67e+01 1a5t a.80.1.1 18450 c.37.1.13 32423 1dhy 292 3.72e+01 1han d.32.1.3 38504 d.32.1.3 38505 1bueA 265 3.73e+01 1btl e.3.1.1 42727 1hyqA 263 3.78e+01 1hyqA c.37.1.10 61412 1h67A 108 3.90e+01 a.40.1.1 65643 1lct 333 4.00e+01 1cb6A c.94.1.2 35836