# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ihuA 589 6.63e-02 c.37.1.10 62394 c.37.1.10 62395 1f48A 589 1.22e-01 1f48A c.37.1.10 32280 c.37.1.10 32281 1nzyA 269 3.15e-01 1nzyA c.14.1.3 30903 1dszA 86 3.85e-01 2nllB g.39.1.2 45129 1gw5B 591 1.93e+00 1fntc 245 2.13e+00 1hra 81 2.16e+00 2nllB g.39.1.2 45130 1bza 262 2.86e+00 1btl e.3.1.1 42701 1hyqA 263 3.18e+00 1hyqA c.37.1.10 61412 3minC 491 3.58e+00 1qguA c.92.2.3 35607 1gdtA 183 4.04e+00 2rslA a.4.1.2 16021 c.53.1.1 33348 1fwcC 567 5.10e+00 1ubpC b.92.1.1 28410 c.1.9.2 29032 2minA 491 6.96e+00 1qguA c.92.2.3 35609 1jksA 294 7.24e+00 1kfiA 572 7.71e+00 c.84.1.1 68555 c.84.1.1 68556 c.84.1.1 68557 d.129.2.1 68558 1kwmA 402 7.93e+00 1k3eA 156 8.18e+00 d.198.1.1 68103 1g6zA 70 8.42e+00 1g6zA d.9.2.2 60321 3pmgA 561 9.41e+00 3pmgA c.84.1.1 35408 c.84.1.1 35409 c.84.1.1 35410 d.129.2.1 41301 1jli 112 1.02e+01 1jli a.26.1.2 16884 1pkn 530 1.07e+01 1a49A b.58.1.1 27042 c.1.12.1 29271 c.49.1.1 33125 1k8kE 178 1.16e+01 a.148.1.1 68311 1pmi 440 1.22e+01 1pmi b.82.1.3 28114 1ef8A 261 1.27e+01 1ef8A c.14.1.3 30921 1aky 221 1.38e+01 1zin c.37.1.1 31896 g.41.2.1 45197 1kt9A 138 1.40e+01 2rslA 140 1.50e+01 2rslA c.53.1.1 33345 2fsp 124 1.54e+01 1dz3A c.23.1.1 31119 1binA 143 1.57e+01 2gdm a.1.1.2 15231 1kktA 511 1.64e+01 a.102.2.1 68687 4pgaA 337 1.77e+01 4pgaA c.88.1.1 35565 1lct 333 1.77e+01 1cb6A c.94.1.2 35836 1a8y 367 1.81e+01 1a8y c.47.1.3 32781 c.47.1.3 32782 c.47.1.3 32783 1isaA 192 1.87e+01 1avmA a.2.11.1 15731 d.44.1.1 38724 1iscA 192 1.88e+01 1avmA a.2.11.1 15733 d.44.1.1 38726 1g4wR 383 1.92e+01 1g4uS a.24.11.1 16644 c.45.1.2 32692 1fslA 143 1.95e+01 2gdm a.1.1.2 15229 1erp 38 1.98e+01 2erl a.10.1.1 16363 1h67A 108 2.01e+01 a.40.1.1 65643 1hx0A 496 2.10e+01 b.71.1.1 61346 c.1.8.1 61347 1gyfA 62 2.25e+01 1gyfA d.76.1.1 39749 1iieA 75 2.26e+01 1iieA a.109.1.1 19039 1ep3A 311 2.44e+01 2dorA c.1.4.1 28597 1psrA 100 2.45e+01 1psrA a.39.1.2 17180 1lxtA 561 2.46e+01 3pmgA c.84.1.1 35432 c.84.1.1 35433 c.84.1.1 35434 d.129.2.1 41309 1vid 221 2.47e+01 1vid c.66.1.1 34178 1gnwA 211 2.47e+01 1gnwA a.45.1.1 17727 c.47.1.5 33021 1fy2A 229 2.49e+01 1fyeA c.23.16.4 31478 1h6pA 203 2.53e+01 a.146.1.1 60690 1fbaA 361 2.54e+01 1fbaA c.1.10.1 29120 2aaa 484 2.57e+01 7taa b.71.1.1 27777 c.1.8.1 28764 1a32 88 2.63e+01 1a32 a.16.1.2 16384 1a49A 530 2.84e+01 1a49A b.58.1.1 27026 c.1.12.1 29255 c.49.1.1 33109 1hstA 90 3.02e+01 1hstA a.4.5.13 16140 1crzA 403 3.05e+01 1crzA b.68.4.1 27629 c.51.2.1 33211 1a5t 334 3.21e+01 1a5t a.80.1.1 18450 c.37.1.13 32423 1csh 435 3.35e+01 1csh a.103.1.1 18880 1amz 435 3.44e+01 1csh a.103.1.1 18884 1g5pA 289 3.73e+01 1cp2A c.37.1.10 32253 1ez1A 392 3.78e+01 1ez1A b.84.2.1 28248 c.30.1.1 31655 d.142.1.2 41500 1ewkA 490 3.78e+01 1ewkA c.93.1.1 35712 1rom 403 3.82e+01 1rom a.104.1.1 18963 1eyzA 392 3.83e+01 1ez1A b.84.2.1 28246 c.30.1.1 31653 d.142.1.2 41498 1hmcA 148 3.89e+01 1hmcB a.26.1.2 16867 1k8kG 151 3.92e+01 a.118.13.1 68313 1fp6A 289 3.97e+01 1cp2A c.37.1.10 32243