# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ihuA 589 2.19e-02 c.37.1.10 62394 c.37.1.10 62395 1f48A 589 3.53e-02 1f48A c.37.1.10 32280 c.37.1.10 32281 1dszA 86 7.14e-02 2nllB g.39.1.2 45129 1bza 262 2.72e-01 1btl e.3.1.1 42701 1nzyA 269 2.79e-01 1nzyA c.14.1.3 30903 1hra 81 4.47e-01 2nllB g.39.1.2 45130 1fntc 245 6.36e-01 1kfiA 572 6.65e-01 c.84.1.1 68555 c.84.1.1 68556 c.84.1.1 68557 d.129.2.1 68558 1hyqA 263 7.01e-01 1hyqA c.37.1.10 61412 3pmgA 561 8.60e-01 3pmgA c.84.1.1 35408 c.84.1.1 35409 c.84.1.1 35410 d.129.2.1 41301 1bn7A 294 1.14e+00 1bn6A c.69.1.8 34677 1bn6A 294 1.19e+00 1bn6A c.69.1.8 34678 1cqwA 295 1.27e+00 1b6g c.69.1.8 34679 1gdtA 183 1.47e+00 2rslA a.4.1.2 16021 c.53.1.1 33348 1lxtA 561 1.74e+00 3pmgA c.84.1.1 35432 c.84.1.1 35433 c.84.1.1 35434 d.129.2.1 41309 1jksA 294 1.94e+00 1aky 221 2.99e+00 1zin c.37.1.1 31896 g.41.2.1 45197 1kwmA 402 4.08e+00 1k3eA 156 4.63e+00 d.198.1.1 68103 2lfb 100 5.90e+00 1lfb a.4.1.1 15990 1hzoA 271 6.03e+00 1gnwA 211 6.48e+00 1gnwA a.45.1.1 17727 c.47.1.5 33021 1fslA 143 6.76e+00 2gdm a.1.1.2 15229 1erp 38 7.08e+00 2erl a.10.1.1 16363 1i86A 389 7.25e+00 c.95.1.2 66068 c.95.1.2 66069 1bi5A 389 7.26e+00 1bi5A c.95.1.2 35985 c.95.1.2 35986 1i88A 389 7.73e+00 c.95.1.2 66070 c.95.1.2 66071 1binA 143 7.74e+00 2gdm a.1.1.2 15231 1gw5B 591 8.51e+00 3minC 491 8.96e+00 1qguA c.92.2.3 35607 2nllB 103 9.23e+00 2nllB g.39.1.2 45115 2fsp 124 9.38e+00 1dz3A c.23.1.1 31119 1bueA 265 9.79e+00 1btl e.3.1.1 42727 1dceB 331 1.00e+01 1dceB a.102.4.3 18872 1bsg 266 1.01e+01 1btl e.3.1.1 42729 1g6zA 70 1.04e+01 1g6zA d.9.2.2 60321 1avmA 201 1.06e+01 1avmA a.2.11.1 15782 d.44.1.1 38745 1bsmA 201 1.07e+01 1avmA a.2.11.1 15780 d.44.1.1 38743 1ixxB 123 1.14e+01 1ixxB d.169.1.1 42336 1kxlA 199 1.17e+01 1g4wR 383 1.20e+01 1g4uS a.24.11.1 16644 c.45.1.2 32692 1ekjA 221 1.21e+01 1ekjB c.53.2.1 33364 2aaa 484 1.22e+01 7taa b.71.1.1 27777 c.1.8.1 28764 1qk8A 146 1.25e+01 1ewxA c.47.1.10 33061 1gyfA 62 1.32e+01 1gyfA d.76.1.1 39749 1hx0A 496 1.32e+01 b.71.1.1 61346 c.1.8.1 61347 1fyeA 229 1.35e+01 1fyeA c.23.16.4 31477 1h6pA 203 1.37e+01 a.146.1.1 60690 1ekjB 221 1.42e+01 1ekjB c.53.2.1 33365 1pkn 530 1.56e+01 1a49A b.58.1.1 27042 c.1.12.1 29271 c.49.1.1 33125 1lct 333 1.57e+01 1cb6A c.94.1.2 35836 1opp 38 1.65e+01 1opp j.39.1.1 46292 1ep3A 311 1.67e+01 2dorA c.1.4.1 28597 1fy2A 229 1.73e+01 1fyeA c.23.16.4 31478 1a49A 530 1.76e+01 1a49A b.58.1.1 27026 c.1.12.1 29255 c.49.1.1 33109 1pmi 440 1.76e+01 1pmi b.82.1.3 28114 1cd0A 111 1.88e+01 8fabA b.1.1.1 20559 1h67A 108 1.89e+01 a.40.1.1 65643 1iieA 75 2.00e+01 1iieA a.109.1.1 19039 4pgaA 337 2.08e+01 4pgaA c.88.1.1 35565 1ef8A 261 2.08e+01 1ef8A c.14.1.3 30921 1dl2A 511 2.20e+01 1dl2A a.102.2.1 18844 1tafB 70 2.22e+01 1tafB a.22.1.3 16482 1fwp 139 2.23e+01 1eayC d.58.24.1 39396 1j97A 211 2.29e+01 1f5sA c.108.1.4 62753 1kktA 511 2.31e+01 a.102.2.1 68687 1dts 221 2.34e+01 1byi c.37.1.10 32200 2rslA 140 2.37e+01 2rslA c.53.1.1 33345 1b0zA 445 2.39e+01 2pgi c.80.1.2 35309 2pgi 445 2.39e+01 2pgi c.80.1.2 35308 1fp6A 289 2.40e+01 1cp2A c.37.1.10 32243 1a5t 334 2.43e+01 1a5t a.80.1.1 18450 c.37.1.13 32423 1g5pA 289 2.46e+01 1cp2A c.37.1.10 32253 1nipA 289 2.46e+01 1cp2A c.37.1.10 32263 1dioG 173 2.49e+01 1dioG a.23.2.1 16496 1dbs 224 2.54e+01 1byi c.37.1.10 32209 1volA 204 2.56e+01 1tfb a.74.1.2 18370 a.74.1.2 18371 1fbaA 361 2.57e+01 1fbaA c.1.10.1 29120 1isaA 192 2.57e+01 1avmA a.2.11.1 15731 d.44.1.1 38724 1iscA 192 2.57e+01 1avmA a.2.11.1 15733 d.44.1.1 38726 1crzA 403 2.59e+01 1crzA b.68.4.1 27629 c.51.2.1 33211 1hmcB 148 2.60e+01 1hmcB a.26.1.2 16868 1c7qA 445 2.61e+01 2pgi c.80.1.2 35307 1l7mA 211 2.61e+01 1qgxA 357 2.74e+01 1qgxA e.7.1.1 42973 1hmcA 148 2.74e+01 1hmcB a.26.1.2 16867 1f5sA 211 2.77e+01 1f5sA c.108.1.4 59656 2ilk 160 2.82e+01 2ilk a.26.1.3 16885 1jli 112 2.89e+01 1jli a.26.1.2 16884 2minA 491 2.92e+01 1qguA c.92.2.3 35609 1vpt 348 2.94e+01 3mag c.66.1.9 34207 1fmtA 314 2.96e+01 1fmtA b.46.1.1 25758 c.65.1.1 34174 1ks2A 219 3.11e+01 1ig8A 486 3.14e+01 2yhx c.55.1.3 64746 c.55.1.3 64747 1h99A 224 3.16e+01 a.142.1.1 60814 a.142.1.1 60815 1ka1A 357 3.36e+01 e.7.1.1 68369 1aw9 216 3.41e+01 1gnwA a.45.1.1 17736 c.47.1.5 33030 1jflA 228 3.43e+01 1csh 435 3.43e+01 1csh a.103.1.1 18880 1g6aA 271 3.52e+01 1btl e.3.1.1 42704 1g8kA 825 3.52e+01 1g8jA b.52.2.2 26920 c.81.1.1 35328 1tfb 208 3.53e+01 1tfb a.74.1.2 18382 a.74.1.2 18383 1amz 435 3.54e+01 1csh a.103.1.1 18884 1e3jA 352 3.57e+01 1e3jA b.35.1.2 24765 c.2.1.1 29781 1hr6B 443 3.57e+01 1be3A d.185.1.1 61166 d.185.1.1 61167 1byi 224 3.59e+01 1byi c.37.1.10 32199 1dad 224 3.59e+01 1byi c.37.1.10 32204 1g8jA 825 3.60e+01 1g8jA b.52.2.2 26924 c.81.1.1 35332 1lshA 1056 3.64e+01 1sur 215 3.74e+01 1sur c.26.2.2 31620 1iciA 256 3.75e+01 1iciA c.31.1.5 62266 1bpoA 494 3.79e+01 1bpoA a.118.1.4 19143 b.69.6.1 27670 1eexG 173 3.81e+01 1dioG a.23.2.1 16490 1d5tA 433 3.82e+01 1gnd c.3.1.3 30422 d.16.1.6 37986 1ewxA 146 3.83e+01 1ewxA c.47.1.10 33062 2cblA 305 3.87e+01 2cblA a.39.1.7 17380 a.48.1.1 17774 d.93.1.1 40528