Best Alignments for YGR229C

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1h99A/YGR229C-1h99A-global-str2-1.5-adpstyle5.a2m 8.4832e+004.3443e-02 a.142.1.1
1umwA/YGR229C-1umwA-local-str2-1.5-adpstyle5.a2m 2.6781e+015.4490e-02
1h99A/YGR229C-1h99A-local-str2-1.5-adpstyle5.a2m 8.4832e+007.0009e-02 a.142.1.1
1h99A/YGR229C-1h99A-local-str-1.5-adpstyle5.a2m 8.4832e+001.7523e-01 a.142.1.1
1h99A/YGR229C-1h99A-global-str-1.5-adpstyle5.a2m 8.4832e+004.7844e-01 a.142.1.1
1umwA/YGR229C-1umwA-global-str2-1.5-adpstyle5.a2m 2.6781e+016.0586e-01
1h99A/YGR229C-1h99A-global-alpha-0.3-adpstyle5.a2m 8.4832e+001.6084e+00 a.142.1.1
1h99A/YGR229C-1h99A-local-str-0.3-adpstyle5.a2m 8.4832e+002.0440e+00 a.142.1.1
1h99A/YGR229C-1h99A-local-dssp-ebghstl-0.3-adpstyle5.a2m 8.4832e+002.1735e+00 a.142.1.1
1h99A/YGR229C-1h99A-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 8.4832e+002.3113e+00 a.142.1.1
1gz7A/YGR229C-1gz7A-global-adpstyle5.a2m 1.6148e+012.6989e+00
1gz7A/YGR229C-1gz7A-global-adpstyle1.a2m 1.6148e+012.6989e+00
1bplA/1bli-YGR229C-fssp-local-adpstyle5.a2m 8.5052e+002.8808e+00 1bli c.1.8.1
1h99A/YGR229C-1h99A-global-str-0.3-adpstyle5.a2m 8.4832e+002.9532e+00 a.142.1.1
1h99A/YGR229C-1h99A-local-stride-ebghtl-0.3-adpstyle5.a2m 8.4832e+003.1076e+00 a.142.1.1
1h99A/YGR229C-1h99A-local-alpha-0.3-adpstyle5.a2m 8.4832e+003.1176e+00 a.142.1.1
1ob0A/YGR229C-1ob0A-global-adpstyle1.a2m 1.0878e+013.2113e+00 b.71.1.1
c.1.8.1
1ob0A/YGR229C-1ob0A-global-adpstyle5.a2m 1.0878e+013.2113e+00 b.71.1.1
c.1.8.1
1h99A/YGR229C-1h99A-global-dssp-ebghstl-0.3-adpstyle5.a2m 8.4832e+003.2772e+00 a.142.1.1
1bplA/1bli-YGR229C-fssp-global-adpstyle5.a2m 8.5052e+003.3879e+00 1bli c.1.8.1
1h99A/YGR229C-1h99A-global-adpstyle5.a2m 8.4832e+003.3990e+00 a.142.1.1
1h99A/YGR229C-1h99A-global-adpstyle1.a2m 8.4832e+003.3990e+00 a.142.1.1
1umwA/YGR229C-1umwA-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 2.6781e+013.5529e+00
1h99A/YGR229C-1h99A-global-stride-ebghtl-0.3-adpstyle5.a2m 8.4832e+003.7451e+00 a.142.1.1
1ig8A/YGR229C-1ig8A-local-str2+CB_burial_14_7-0.4+0.4-adpstyle5.a2m 2.3023e+014.1325e+00 2yhx c.55.1.3
1fmmS/1bfg-YGR229C-fssp-global-adpstyle5.a2m 1.6586e+014.5628e+00 1bfg b.42.1.1
1fmmS/1bfg-YGR229C-fssp-local-adpstyle5.a2m 1.6586e+014.9114e+00 1bfg b.42.1.1
1ig8A/2yhx-YGR229C-fssp-global-adpstyle5.a2m 2.3023e+015.7880e+00 2yhx c.55.1.3
1bplA/YGR229C-1bplA-local-adpstyle1.a2m 8.5052e+006.9166e+00 1bli c.1.8.1
1bplA/YGR229C-1bplA-local-adpstyle5.a2m 8.5052e+006.9166e+00 1bli c.1.8.1
1cvuA/1cqeA-YGR229C-fssp-local-adpstyle5.a2m 2.1176e+017.2012e+00 1cqeA g.3.11.1
a.93.1.2
1umwA/YGR229C-1umwA-local-stride-ebghtl-0.3-adpstyle5.a2m 2.6781e+017.5645e+00
1cvuA/1cqeA-YGR229C-fssp-global-adpstyle5.a2m 2.1176e+017.5904e+00 1cqeA g.3.11.1
a.93.1.2
1ig8A/2yhx-YGR229C-fssp-local-adpstyle5.a2m 2.3023e+017.7567e+00 2yhx c.55.1.3
1ddxA/1cqeA-YGR229C-fssp-local-adpstyle5.a2m 2.5662e+018.6057e+00 1cqeA g.3.11.1
a.93.1.2
1ddxA/1cqeA-YGR229C-fssp-global-adpstyle5.a2m 2.5662e+019.0734e+00 1cqeA g.3.11.1
a.93.1.2
1ig8A/YGR229C-1ig8A-local-str-0.3-adpstyle5.a2m 2.3023e+019.1630e+00 2yhx c.55.1.3
1ob0A/YGR229C-1ob0A-local-adpstyle5.a2m 1.0878e+019.2972e+00 b.71.1.1
c.1.8.1
1ob0A/YGR229C-1ob0A-local-adpstyle1.a2m 1.0878e+019.2972e+00 b.71.1.1
c.1.8.1
1umwA/YGR229C-1umwA-local-dssp-ebghstl-0.3-adpstyle5.a2m 2.6781e+019.7249e+00
1umwA/YGR229C-1umwA-local-str-0.3-adpstyle5.a2m 2.6781e+011.0781e+01
1ig8A/YGR229C-1ig8A-local-dssp-ebghstl-0.3-adpstyle5.a2m 2.3023e+011.0798e+01 2yhx c.55.1.3
1h99A/YGR229C-1h99A-local-adpstyle1.a2m 8.4832e+001.1409e+01 a.142.1.1
1h99A/YGR229C-1h99A-local-adpstyle5.a2m 8.4832e+001.1409e+01 a.142.1.1
1ig8A/YGR229C-1ig8A-global-str-0.3-adpstyle5.a2m 2.3023e+011.1746e+01 2yhx c.55.1.3
1ig8A/YGR229C-1ig8A-local-stride-ebghtl-0.3-adpstyle5.a2m 2.3023e+011.1808e+01 2yhx c.55.1.3
1gz7A/YGR229C-1gz7A-local-adpstyle5.a2m 1.6148e+011.4487e+01
1gz7A/YGR229C-1gz7A-local-adpstyle1.a2m 1.6148e+011.4487e+01
1fmmS/YGR229C-1fmmS-local-adpstyle1.a2m 1.6586e+011.4657e+01 1bfg b.42.1.1
1fmmS/YGR229C-1fmmS-local-adpstyle5.a2m 1.6586e+011.4657e+01 1bfg b.42.1.1
1bplA/YGR229C-1bplA-simplesw-adpstyle5.a2m 8.5052e+001.6522e+01 1bli c.1.8.1
1bplA/YGR229C-1bplA-simplesw-adpstyle1.a2m 8.5052e+001.6522e+01 1bli c.1.8.1
1fmmS/YGR229C-1fmmS-global-adpstyle5.a2m 1.6586e+011.8775e+01 1bfg b.42.1.1
1fmmS/YGR229C-1fmmS-global-adpstyle1.a2m 1.6586e+011.8775e+01 1bfg b.42.1.1
1cvuA/YGR229C-1cvuA-local-adpstyle1.a2m 2.1176e+011.9263e+01 1cqeA g.3.11.1
a.93.1.2
1cvuA/YGR229C-1cvuA-local-adpstyle5.a2m 2.1176e+011.9263e+01 1cqeA g.3.11.1
a.93.1.2
1ig8A/YGR229C-1ig8A-local-alpha-0.3-adpstyle5.a2m 2.3023e+012.0567e+01 2yhx c.55.1.3
1ob0A/YGR229C-1ob0A-simplesw-adpstyle5.a2m 1.0878e+012.1617e+01 b.71.1.1
c.1.8.1
1ob0A/YGR229C-1ob0A-simplesw-adpstyle1.a2m 1.0878e+012.1617e+01 b.71.1.1
c.1.8.1
1bplA/YGR229C-1bplA-global-adpstyle1.a2m 8.5052e+002.2658e+01 1bli c.1.8.1
1bplA/YGR229C-1bplA-global-adpstyle5.a2m 8.5052e+002.2658e+01 1bli c.1.8.1
1h99A/1h99A-YGR229C-local-adpstyle1.a2m 8.4832e+002.3179e+01 a.142.1.1
1h99A/1h99A-YGR229C-local-adpstyle5.a2m 8.4832e+002.3179e+01 a.142.1.1
1h99A/YGR229C-1h99A-simplesw-adpstyle5.a2m 8.4832e+002.3233e+01 a.142.1.1
1h99A/YGR229C-1h99A-simplesw-adpstyle1.a2m 8.4832e+002.3233e+01 a.142.1.1
1ddxA/YGR229C-1ddxA-local-adpstyle5.a2m 2.5662e+012.4278e+01 1cqeA g.3.11.1
a.93.1.2
1ddxA/YGR229C-1ddxA-local-adpstyle1.a2m 2.5662e+012.4278e+01 1cqeA g.3.11.1
a.93.1.2
1pxxA/YGR229C-1pxxA-local-adpstyle1.a2m 2.6472e+012.5136e+01
1pxxA/YGR229C-1pxxA-local-adpstyle5.a2m 2.6472e+012.5136e+01
1h99A/1h99A-YGR229C-global-adpstyle1.a2m 8.4832e+002.5535e+01 a.142.1.1
1h99A/1h99A-YGR229C-global-adpstyle5.a2m 8.4832e+002.5535e+01 a.142.1.1
1cvuA/YGR229C-1cvuA-global-adpstyle1.a2m 2.1176e+012.8764e+01 1cqeA g.3.11.1
a.93.1.2
1cvuA/YGR229C-1cvuA-global-adpstyle5.a2m 2.1176e+012.8764e+01 1cqeA g.3.11.1
a.93.1.2
1ddxA/YGR229C-1ddxA-global-adpstyle1.a2m 2.5662e+013.1170e+01 1cqeA g.3.11.1
a.93.1.2
1ddxA/YGR229C-1ddxA-global-adpstyle5.a2m 2.5662e+013.1170e+01 1cqeA g.3.11.1
a.93.1.2
1umwA/YGR229C-1umwA-local-alpha-0.3-adpstyle5.a2m 2.6781e+013.2402e+01
1fmmS/YGR229C-1fmmS-simplesw-adpstyle1.a2m 1.6586e+013.5774e+01 1bfg b.42.1.1
1fmmS/YGR229C-1fmmS-simplesw-adpstyle5.a2m 1.6586e+013.5774e+01 1bfg b.42.1.1
1ig8A/1ig8A-YGR229C-global-adpstyle5.a2m 2.3023e+013.8671e+01 2yhx c.55.1.3
1ig8A/1ig8A-YGR229C-global-adpstyle1.a2m 2.3023e+013.8671e+01 2yhx c.55.1.3
1ig8A/YGR229C-1ig8A-global-dssp-ebghstl-0.3-adpstyle5.a2m 2.3023e+013.9212e+01 2yhx c.55.1.3
1gz7A/YGR229C-1gz7A-simplesw-adpstyle1.a2m 1.6148e+013.9981e+01
1gz7A/YGR229C-1gz7A-simplesw-adpstyle5.a2m 1.6148e+013.9981e+01
1ig8A/YGR229C-1ig8A-global-alpha-0.3-adpstyle5.a2m 2.3023e+014.2523e+01 2yhx c.55.1.3
1pxxA/YGR229C-1pxxA-global-adpstyle1.a2m 2.6472e+014.3744e+01
1pxxA/YGR229C-1pxxA-global-adpstyle5.a2m 2.6472e+014.3744e+01
1ig8A/YGR229C-1ig8A-local-adpstyle5.a2m 2.3023e+014.4860e+01 2yhx c.55.1.3
1ig8A/YGR229C-1ig8A-local-adpstyle1.a2m 2.3023e+014.4860e+01 2yhx c.55.1.3
1umwA/YGR229C-1umwA-local-adpstyle1.a2m 2.6781e+014.9746e+01
1umwA/YGR229C-1umwA-local-adpstyle5.a2m 2.6781e+014.9746e+01
1umwA/1umwA-YGR229C-local-adpstyle1.a2m 2.6781e+015.1150e+01
1umwA/1umwA-YGR229C-local-adpstyle5.a2m 2.6781e+015.1150e+01
1cvuA/YGR229C-1cvuA-simplesw-adpstyle1.a2m 2.1176e+015.1653e+01 1cqeA g.3.11.1
a.93.1.2
1cvuA/YGR229C-1cvuA-simplesw-adpstyle5.a2m 2.1176e+015.1653e+01 1cqeA g.3.11.1
a.93.1.2
1ig8A/1ig8A-YGR229C-local-adpstyle1.a2m 2.3023e+015.2207e+01 2yhx c.55.1.3
1ig8A/1ig8A-YGR229C-local-adpstyle5.a2m 2.3023e+015.2207e+01 2yhx c.55.1.3
1ig8A/YGR229C-1ig8A-simplesw-adpstyle5.a2m 2.3023e+015.3969e+01 2yhx c.55.1.3
1ig8A/YGR229C-1ig8A-simplesw-adpstyle1.a2m 2.3023e+015.3969e+01 2yhx c.55.1.3
1umwA/YGR229C-1umwA-global-alpha-0.3-adpstyle5.a2m 2.6781e+015.4679e+01
1ig8A/YGR229C-1ig8A-global-stride-ebghtl-0.3-adpstyle5.a2m 2.3023e+015.4720e+01 2yhx c.55.1.3
1umwA/YGR229C-1umwA-global-stride-ebghtl-0.3-adpstyle5.a2m 2.6781e+015.5450e+01
1umwA/YGR229C-1umwA-simplesw-adpstyle5.a2m 2.6781e+015.8569e+01
1umwA/YGR229C-1umwA-simplesw-adpstyle1.a2m 2.6781e+015.8569e+01
1ddxA/YGR229C-1ddxA-simplesw-adpstyle5.a2m 2.5662e+015.9000e+01 1cqeA g.3.11.1
a.93.1.2
1ddxA/YGR229C-1ddxA-simplesw-adpstyle1.a2m 2.5662e+015.9000e+01 1cqeA g.3.11.1
a.93.1.2
1pxxA/YGR229C-1pxxA-simplesw-adpstyle1.a2m 2.6472e+016.0627e+01
1pxxA/YGR229C-1pxxA-simplesw-adpstyle5.a2m 2.6472e+016.0627e+01
1ig8A/YGR229C-1ig8A-global-adpstyle5.a2m 2.3023e+016.1184e+01 2yhx c.55.1.3
1ig8A/YGR229C-1ig8A-global-adpstyle1.a2m 2.3023e+016.1184e+01 2yhx c.55.1.3
1ig8A/YGR229C-1ig8A-local-str2-1.5-adpstyle5.a2m 2.3023e+016.1234e+01 2yhx c.55.1.3
1ig8A/YGR229C-1ig8A-global-str2-1.5-adpstyle5.a2m 2.3023e+016.1247e+01 2yhx c.55.1.3
1umwA/YGR229C-1umwA-global-dssp-ebghstl-0.3-adpstyle5.a2m 2.6781e+016.2794e+01
1umwA/1umwA-YGR229C-global-adpstyle1.a2m 2.6781e+016.6749e+01
1umwA/1umwA-YGR229C-global-adpstyle5.a2m 2.6781e+016.6749e+01
1umwA/YGR229C-1umwA-global-str-0.3-adpstyle5.a2m 2.6781e+016.8410e+01
1umwA/YGR229C-1umwA-global-adpstyle1.a2m 2.6781e+016.9400e+01
1umwA/YGR229C-1umwA-global-adpstyle5.a2m 2.6781e+016.9400e+01

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001