%  SAM: /projects/compbio/bin/i686/hmmscore v3.4 (July 31, 2003) compiled 09/03/03_16:30:36
%  (c) 1992-2001 Regents of the University of California, Santa Cruz
%
%          Sequence Alignment and Modeling Software System
%         http://www.cse.ucsc.edu/research/compbio/sam.html
%
% ----------------- Citations (SAM, SAM-T2K, HMMs) --------------------
% R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
%  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
% K. Karplus, et al., What is the value added by human intervention in protein
%  structure prediction, Proteins: Stucture, Function, Genetics 45(S5):86--91, 2001.
% A. Krogh et al., Hidden Markov models in computational biology:
%  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
% ---------------------------------------------------------------------
%  YGR229C.t2k-100-40-40-str2+CB_burial_14_7   Host: cc48    Wed Nov 19 16:09:18 2003
%  karplus                                     Dir:  /projects/compbio/experiments/protein-predict/yeast/YGR2/YGR229C
% ---------------------------------------------------------------------
% Inserted Files: 
% Database Files:  /projects/compbio/experiments/models.97/indexes/t2k.x-seqs,/projects/compbio/experiments/models.97/indexes/t2k.str2s,/projects/compbio/experiments/models.97/indexes/t2k.CB-burial-14-7s
%

MODLIBMOD YGR229C.t2k-100-40-40-str2+CB_burial_14_7 YGR229C.t2k-100-40-40-str2+CB_burial_14_7 model number 1
% Calibration data for 8940 database sequences
% 3070 of 8940 scores > calibrate_threshold (0) used.
trackmod YGR229C.t2k-w0.5.mod,YGR229C.t2k.str2.mod,YGR229C.t2k.CB_burial_14_7.mod
trackcoeff 1.0,0.4,0.4
alphabet protein,STR2,CB_BURIAL_14_7
lambda 0.714958
tau 0.820440
sw 2
dpstyle 0
jumpinprob 1.000000
jumpoutprob 1.000000
subtractnull 4
FIMmethodscore -6
insertmethodscore 0
adjust_score 2
ENDMODLIBMOD