# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1csh 435 3.09e-01 1csh a.103.1.1 18880 1amz 435 3.52e-01 1csh a.103.1.1 18884 1iw7C 1119 7.37e-01 1csc 433 1.02e+00 1csh a.103.1.1 18886 1pbe 394 1.30e+00 1pbe c.3.1.2 30338 d.16.1.2 37869 1bgj 394 1.40e+00 1pbe c.3.1.2 30352 d.16.1.2 37883 1k0iA 394 1.50e+00 c.3.1.2 67942 d.16.1.2 67943 2phh 394 1.87e+00 1pbe c.3.1.2 30353 d.16.1.2 37884 6cts 433 1.90e+00 1csh a.103.1.1 18891 1lmzA 187 1.90e+00 1c4zA 358 2.15e+00 1c4zA d.148.1.1 41766 1jjuA 489 4.16e+00 a.3.1.7 66774 a.3.1.7 66775 b.1.1.6 66776 b.1.1.6 66777 b.61.4.1 66778 1rpa 342 4.30e+00 1cviA c.60.1.2 33983 1dmtA 696 4.89e+00 1dmtA d.92.1.4 40296 1jmeA 455 6.80e+00 a.104.1.1 66885 1quvA 578 8.12e+00 1quvA e.8.1.4 43119 1gk4A 84 8.29e+00 1qi7A 253 8.74e+00 1qi7A d.165.1.1 42210 1scfA 273 9.02e+00 1exzA a.26.1.2 16873 1k3lA 221 9.71e+00 1dw9A 156 9.75e+00 1dw9A a.35.1.4 17065 d.72.1.1 39596 2cblA 305 1.02e+01 2cblA a.39.1.7 17380 a.48.1.1 17774 d.93.1.1 40528 1fi2A 201 1.03e+01 1fi2A b.82.1.2 59845 1eu1A 780 1.04e+01 1dmr b.52.2.2 26903 c.81.1.1 35311 1qtrA 317 1.09e+01 1qtrA c.69.1.7 34660 1gseA 221 1.09e+01 1pgtA a.45.1.1 17667 c.47.1.5 32961 1gx5A 536 1.20e+01 1fiy 883 1.28e+01 1fiy c.1.12.3 29307 1h6oA 204 1.35e+01 a.146.1.1 60689 1b47A 304 1.37e+01 2cblA a.39.1.7 17381 a.48.1.1 17775 d.93.1.1 40529 1exzA 141 1.41e+01 1exzA a.26.1.2 16877 1jpzA 473 1.48e+01 a.104.1.1 67069 1d6mA 653 1.48e+01 1d6mA e.10.1.1 43248 1qb4A 883 1.49e+01 2minB 522 1.59e+01 1qguB c.92.2.3 35610 1jeqA 609 1.70e+01 1jeqA a.140.2.1 64748 e.31.1.1 64749 1ecxA 384 1.75e+01 1ecxA c.67.1.3 34431 1i5pA 633 1.78e+01 1i5pA b.18.1.3 61817 b.77.2.1 61818 f.1.3.1 61819 1ihp 438 1.78e+01 1ihp c.60.1.3 33993 1fnnA 389 1.79e+01 1fnnA a.4.5.11 16129 c.37.1.13 32426 1c2pA 576 1.83e+01 1quvA e.8.1.4 43117 1ko9A 345 1.85e+01 a.96.1.3 68717 d.129.1.2 68718 4cpv 109 1.86e+01 1a75A a.39.1.4 17198 1hp5A 512 1.92e+01 1hp4A c.1.8.6 61113 d.92.2.1 61114 1eg5A 384 1.92e+01 1ecxA c.67.1.3 34429 1dwkA 156 1.93e+01 1dw9A a.35.1.4 17075 d.72.1.1 39606 1qrkA 731 1.94e+01 1f13A b.1.1.5 21889 b.1.5.1 22187 b.1.5.1 22188 d.3.1.4 37119 2bmhA 455 1.94e+01 1bu7A a.104.1.1 18941 1dysA 348 1.96e+01 1bvwA c.6.1.1 30669 1jakA 512 1.96e+01 c.1.8.6 66472 d.92.2.1 66473 1gguA 731 2.02e+01 1f13A b.1.1.5 21885 b.1.5.1 22179 b.1.5.1 22180 d.3.1.4 37115 3minB 522 2.11e+01 1qguB c.92.2.3 35606 1itf 165 2.12e+01 1b5l a.26.1.3 16899 1gk4D 84 2.14e+01 1hp4A 512 2.26e+01 1hp4A c.1.8.6 61111 d.92.2.1 61112 1cdp 109 2.29e+01 1a75A a.39.1.4 17197 1fewA 184 2.38e+01 1fewA a.7.4.1 16334 1g8lA 411 2.38e+01 1g8lA b.85.6.1 60365 b.103.1.1 60366 c.57.1.2 60367 1g73A 162 2.40e+01 1fewA a.7.4.1 16332 1f5qB 252 2.40e+01 1f5qB a.74.1.1 18362 a.74.1.1 18363 1cleA 534 2.44e+01 1thg c.69.1.17 34771 1ebmA 317 2.45e+01 1ebmA a.96.1.3 18751 d.129.1.2 41300 1dbhA 354 2.46e+01 1awe a.87.1.1 18514 b.55.1.1 26967 1jmkC 230 2.62e+01 1qs0A 407 2.63e+01 1qs0A c.36.1.3 31829 1rlr 761 2.74e+01 1rlr a.98.1.1 18753 c.7.1.2 30679 1kcfA 258 2.76e+01 a.140.2.1 68434 c.55.3.7 68435 1csjA 531 2.79e+01 1quvA e.8.1.4 43120 1dmr 823 2.81e+01 1dmr b.52.2.2 26904 c.81.1.1 35312 1ckiA 317 2.83e+01 1csn d.144.1.1 41660 1gkmA 509 2.83e+01 1db1A 259 2.90e+01 1db1A a.123.1.1 19329 1eq2A 310 2.98e+01 1eq2A c.2.1.2 29814 1evuA 731 2.98e+01 1f13A b.1.1.5 21883 b.1.5.1 22175 b.1.5.1 22176 d.3.1.4 37113 1ldjA 760 3.04e+01 1jvpP 298 3.05e+01 d.144.1.1 67371 1hg2A 289 3.20e+01 1hg5A a.118.10.1 61024 1kyhA 276 3.20e+01 1f13A 731 3.21e+01 1f13A b.1.1.5 21877 b.1.5.1 22163 b.1.5.1 22164 d.3.1.4 37107 1fmcA 255 3.23e+01 1cydA c.2.1.2 29856 1fe0A 68 3.27e+01 1cc8A d.58.17.1 39345 1jm6A 407 3.43e+01 a.29.5.1 66876 d.122.1.4 66877 1jqhA 308 3.46e+01 1e1xA 299 3.49e+01 1hcl d.144.1.1 59157 1dar 691 3.55e+01 1dar b.43.3.1 25707 c.37.1.8 32142 d.14.1.1 37547 d.58.11.1 39300 1jeyA 609 3.61e+01 1jeqA e.31.1.1 62924 1isaA 192 3.64e+01 1avmA a.2.11.1 15731 d.44.1.1 38724 1iscA 192 3.65e+01 1avmA a.2.11.1 15733 d.44.1.1 38726 1hf8A 289 3.69e+01 1hg5A a.118.10.1 19219 1eyhA 144 3.76e+01 1eduA a.118.9.1 19214 1gdeA 389 3.76e+01 c.67.1.1 60456 2ebn 289 3.80e+01 2ebn c.1.8.5 28990 1dcnA 424 3.84e+01 1auwA a.127.1.1 19420 1eduA 149 3.87e+01 1eduA a.118.9.1 19215