# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jjuA 489 7.75e-01 a.3.1.7 66774 a.3.1.7 66775 b.1.1.6 66776 b.1.1.6 66777 b.61.4.1 66778 1kyoC 385 1.17e+00 1ezvC 385 1.77e+00 1be3C f.2.1.8 59545 1i5pA 633 2.40e+00 1i5pA b.18.1.3 61817 b.77.2.1 61818 f.1.3.1 61819 1qi7A 253 2.58e+00 1qi7A d.165.1.1 42210 1lmzA 187 2.67e+00 1hg5A 289 3.32e+00 1hg5A a.118.10.1 19221 1hg2A 289 3.33e+00 1hg5A a.118.10.1 61024 1iw7C 1119 3.51e+00 1hf8A 289 3.58e+00 1hg5A a.118.10.1 19219 1e8yA 966 4.30e+00 1e8xA a.118.1.6 19152 b.7.1.1 23187 d.15.1.5 37635 d.144.1.4 41715 1qlaC 256 4.33e+00 1qlaC f.2.1.9 43722 1c4zA 358 4.65e+00 1c4zA d.148.1.1 41766 1csh 435 5.48e+00 1csh a.103.1.1 18880 1lshA 1056 6.33e+00 1gk4A 84 6.58e+00 1amz 435 7.12e+00 1csh a.103.1.1 18884 1qb4A 883 8.05e+00 3blm 257 8.22e+00 1btl e.3.1.1 42709 1ghpA 258 8.41e+00 1btl e.3.1.1 60520 1pioA 257 8.74e+00 1btl e.3.1.1 42719 1csc 433 9.06e+00 1csh a.103.1.1 18886 1fiy 883 9.18e+00 1fiy c.1.12.3 29307 1l9hA 349 9.75e+00 1qazA 351 1.00e+01 1qazA a.102.3.1 18848 1f5qB 252 1.01e+01 1f5qB a.74.1.1 18362 a.74.1.1 18363 1h6oA 204 1.07e+01 a.146.1.1 60689 1dekA 241 1.08e+01 1dekA c.37.1.1 31842 6cts 433 1.10e+01 1csh a.103.1.1 18891 1fmcA 255 1.13e+01 1cydA c.2.1.2 29856 1ecxA 384 1.17e+01 1ecxA c.67.1.3 34431 1qtrA 317 1.22e+01 1qtrA c.69.1.7 34660 1gkuB 1054 1.33e+01 c.37.1.16 65257 c.37.1.16 65258 e.10.1.1 65259 1itf 165 1.35e+01 1b5l a.26.1.3 16899 1jmeA 455 1.38e+01 a.104.1.1 66885 1ezfA 340 1.44e+01 1ezfA a.128.1.2 19440 1alq 266 1.49e+01 1btl e.3.1.1 42707 1e8xA 961 1.50e+01 1e8xA a.118.1.6 19148 b.7.1.1 23183 d.15.1.5 37631 d.144.1.4 41711 1eg5A 384 1.51e+01 1ecxA c.67.1.3 34429 1hw1A 239 1.54e+01 1e2xA a.4.5.6 16111 a.78.1.1 18441 1ko9A 345 1.56e+01 a.96.1.3 68717 d.129.1.2 68718 1eu1A 780 1.57e+01 1dmr b.52.2.2 26903 c.81.1.1 35311 1bk5A 422 1.60e+01 1bk5A a.118.1.1 19130 1dmtA 696 1.60e+01 1dmtA d.92.1.4 40296 2cblA 305 1.71e+01 2cblA a.39.1.7 17380 a.48.1.1 17774 d.93.1.1 40528 1bgj 394 1.76e+01 1pbe c.3.1.2 30352 d.16.1.2 37883 1k3lA 221 1.76e+01 1pbe 394 1.82e+01 1pbe c.3.1.2 30338 d.16.1.2 37869 1gk4D 84 1.89e+01 1jeqA 609 1.98e+01 1jeqA a.140.2.1 64748 e.31.1.1 64749 1avc 673 1.99e+01 1avc a.65.1.1 18178 a.65.1.1 18179 1cleA 534 1.99e+01 1thg c.69.1.17 34771 1dcnA 424 2.00e+01 1auwA a.127.1.1 19420 1e2xA 243 2.05e+01 1e2xA a.4.5.6 16113 a.78.1.1 18443 1hzxA 349 2.06e+01 1f88A f.2.1.1 61466 1fnnA 389 2.09e+01 1fnnA a.4.5.11 16129 c.37.1.13 32426 1qsaA 618 2.10e+01 1qsaA a.118.5.1 19182 d.2.1.6 36988 1gdeA 389 2.14e+01 c.67.1.1 60456 1fftC 204 2.20e+01 1fftC f.2.1.3 43629 1jeyA 609 2.21e+01 1jeqA e.31.1.1 62924 1gd9A 389 2.29e+01 c.67.1.1 60454 1delA 241 2.30e+01 1dekA c.37.1.1 31844 1i7gA 287 2.32e+01 1gseA 221 2.33e+01 1pgtA a.45.1.1 17667 c.47.1.5 32961 1eyhA 144 2.36e+01 1eduA a.118.9.1 19214 1eduA 149 2.44e+01 1eduA a.118.9.1 19215 1g73A 162 2.45e+01 1fewA a.7.4.1 16332 1ixmB 192 2.49e+01 1ixmA d.123.1.1 41115 2phh 394 2.50e+01 1pbe c.3.1.2 30353 d.16.1.2 37884 1efvB 255 2.55e+01 1efvB c.29.1.1 31634 1qpcA 279 2.57e+01 1fgkA d.144.1.2 41685 1inzA 148 2.72e+01 1eduA a.118.9.1 62610 1f88A 348 2.74e+01 1f88A f.2.1.1 43429 1wer 334 2.76e+01 1wer a.116.1.2 19108 2minB 522 2.81e+01 1qguB c.92.2.3 35610 1ezvB 352 2.82e+01 1ezvB d.185.1.1 59543 d.185.1.1 59544 1fewA 184 2.91e+01 1fewA a.7.4.1 16334 1h3nA 878 2.92e+01 1g0oA 283 2.98e+01 1ybvA c.2.1.2 60181 1ee4A 423 3.01e+01 1ee4A a.118.1.1 19128 1e19A 314 3.02e+01 1b7bA c.73.1.1 34967 1fi2A 201 3.04e+01 1fi2A b.82.1.2 59845 2dubE 261 3.05e+01 1nzyA c.14.1.3 30916 1k0iA 394 3.06e+01 c.3.1.2 67942 d.16.1.2 67943 1ast 200 3.07e+01 1iae d.92.1.8 40310 1iae 200 3.07e+01 1iae d.92.1.8 40311 1bk6A 422 3.14e+01 1bk5A a.118.1.1 19133 1b47A 304 3.16e+01 2cblA a.39.1.7 17381 a.48.1.1 17775 d.93.1.1 40529 1dcqA 278 3.25e+01 1dcqA a.118.2.1 19178 g.45.1.1 45326 1fzyA 149 3.26e+01 d.20.1.1 65072 1b3uA 588 3.29e+01 1b3uA a.118.1.2 19135 1f60A 458 3.36e+01 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 1jqhA 308 3.38e+01 3lck 271 3.38e+01 1fmk d.144.1.2 41686 1g4yB 101 3.39e+01 1g4yB f.2.1.11 60251 3minB 522 3.43e+01 1qguB c.92.2.3 35606 1iab 200 3.50e+01 1iae d.92.1.8 40312 1hbnB 442 3.53e+01 1mroB a.89.1.1 60900 d.58.31.2 60901 1dw9A 156 3.55e+01 1dw9A a.35.1.4 17065 d.72.1.1 39596 1quvA 578 3.59e+01 1quvA e.8.1.4 43119 1ybvA 283 3.60e+01 1ybvA c.2.1.2 29948 2occE 109 3.65e+01 2occE a.118.11.1 19224 1js3A 486 3.66e+01 c.67.1.6 67215 1io1A 398 3.68e+01 1io1A e.32.1.1 62611 1ps1A 337 3.68e+01 1ps1A a.128.1.4 19450 1g94A 448 3.74e+01 b.71.1.1 65169 c.1.8.1 65170 1fxtA 149 3.75e+01 d.20.1.1 65055 1jscA 630 3.81e+01 c.31.1.3 67224 c.36.1.1 67225 c.36.1.1 67226 1ebmA 317 3.82e+01 1ebmA a.96.1.3 18751 d.129.1.2 41300 1mroB 442 3.87e+01 1mroB a.89.1.1 18531 d.58.31.2 39449 1gkmA 509 3.93e+01 1ixmA 192 3.94e+01 1ixmA d.123.1.1 41114 1br2A 791 3.94e+01 1lvk b.34.3.1 24558 c.37.1.9 32155 1dcnD 436 3.96e+01 1auwA a.127.1.1 19423