# List of top-scoring protein chains for YGR224W.t2k-w0.5 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 2gfpA 375 1.88e-33 1pw4A 451 2.83e-31 f.38.1.1 95198 2cfqA 417 2.38e-15 1kplA 473 7.10e-02 f.20.1.1 68782 2gifA 1057 5.74e-01 2dhhA 1053 7.26e-01 1mhsA 920 1.18e+00 i.18.1.1 79130 1t9xA 1049 1.24e+00 1oyeA 1049 1.24e+00 d.58.44.1 87587 d.58.44.1 87588 d.58.44.1 87589 d.58.44.1 87590 d.225.1.1 87591 d.225.1.1 87592 f.35.1.1 87593 f.35.1.1 87594 2fynA 445 2.16e+00 1rhzA 436 3.38e+00 f.41.1.1 97495 1yewB 247 3.48e+00 1rh5A 436 3.49e+00 f.41.1.1 97464 1q90B 215 3.64e+00 f.21.1.2 96241 1fx8A 281 4.17e+00 f.19.1.1 43651 1ldfA 281 4.19e+00 f.19.1.1 73845 2a6mA 155 5.04e+00 1pxrA 249 5.88e+00 f.13.1.1 95297 1go4E 100 6.65e+00 h.1.22.1 70296 1kwgA 645 7.71e+00 b.71.1.1 77561 c.1.8.1 77562 c.23.16.5 77563 1wekA 217 8.04e+00 1eboA 131 8.10e+00 2eboA h.3.2.1 45757 2h79A 269 9.02e+00 1navA 263 9.18e+00 a.123.1.1 85500 1gzjA 304 9.42e+00 c.1.8.3 70813 1h1nA 305 9.47e+00 c.1.8.3 70855 2mtaC 147 9.49e+00 2mtaC a.3.1.1 15908 1q5iA 249 1.06e+01 f.13.1.1 95896 1tn5A 249 1.30e+01 1ipaA 274 1.38e+01 c.116.1.1 71254 d.79.3.3 71255 2bg9A 370 1.40e+01 1eq3A 96 1.43e+01 1eq3A d.26.1.1 59486 1tn0A 249 1.47e+01 1bqcA 302 1.48e+01 1bqcA c.1.8.3 28831 1mgyA 249 1.52e+01 f.13.1.1 84959 1jv6A 249 1.52e+01 f.13.1.1 67346 1s53A 227 1.59e+01 f.13.1.1 98521 1gh8A 89 1.60e+01 1gh8A d.58.12.1 39309 1s51A 227 1.62e+01 f.13.1.1 98517 1f50A 227 1.68e+01 1c3wA f.13.1.1 43406 1c8rA 249 1.73e+01 1c3wA f.13.1.1 43407 1l0mA 212 1.74e+01 f.13.1.1 73402 1q5jA 249 1.75e+01 f.13.1.1 95898 1e0pA 228 1.75e+01 1c3wA f.13.1.1 43416 1kgbA 231 1.80e+01 f.13.1.1 68581 1r84A 232 1.80e+01 f.13.1.1 97218 1xjiA 247 1.80e+01 1qhjA 248 1.81e+01 1c3wA f.13.1.1 43409 1brrA 247 1.81e+01 1c3wA f.13.1.1 43421 1p8hA 249 1.81e+01 f.13.1.1 87944 1p8iA 249 1.81e+01 f.13.1.1 87945 1cwqA 248 1.82e+01 1c3wA f.13.1.1 43412 1qd7H 85 1.84e+01 1a32 i.1.1.3 45871 1fjdA 104 1.85e+01 d.26.1.1 59851 1s52A 227 1.86e+01 f.13.1.1 98519 1jc2A 76 1.88e+01 a.39.1.5 62862 1m0kA 262 1.90e+01 f.13.1.1 78344 1r89A 437 1.91e+01 a.160.1.3 97221 d.218.1.7 97222 d.58.16.2 97223 1qzzA 374 1.92e+01 a.4.5.29 96719 c.66.1.12 96720 1s54A 227 2.06e+01 f.13.1.1 98523 1a32 88 2.13e+01 1a32 a.16.1.2 16384 1qmnA 401 2.21e+01 1ovaA e.1.1.1 42624 1p8uA 249 2.32e+01 f.13.1.1 87983 1av6A 295 2.61e+01 3mag c.66.1.25 34218 1s1iL 203 2.63e+01 i.1.1.1 105186 1dbfA 127 2.65e+01 2chsA d.79.1.2 39761 1e7pI 254 2.80e+01 1qlaC f.21.2.1 59364 1whzA 70 2.81e+01 1dipA 78 2.84e+01 1dipA h.1.12.1 45632 3ctn 76 2.86e+01 1ncx a.39.1.5 17241 1vf5A 215 2.88e+01 f.21.1.2 100578 1mg2D 155 2.89e+01 a.3.1.1 79062 1pxsA 249 2.89e+01 f.13.1.1 95299 2bs3C 256 2.94e+01 2iubA 363 2.95e+01 1qlaC 256 3.11e+01 1qlaC f.21.2.1 43722 3mct 297 3.12e+01 3mag c.66.1.25 34215 1eqa 297 3.13e+01 3mag c.66.1.25 34216 1euvA 221 3.13e+01 1euvA d.3.1.7 37133 2ga9A 297 3.13e+01 1who 96 3.14e+01 1who b.7.3.1 23215 2d57A 301 3.16e+01 2g0dA 409 3.19e+01 1qfwH 117 3.27e+01 1gc1H b.1.1.1 20435 2i5nM 323 3.30e+01 1mvwA 840 3.33e+01 i.15.1.1 79523 2apoA 357 3.41e+01 1pwhA 327 3.46e+01 c.79.1.1 95224 1ohfA 644 3.60e+01 b.121.4.8 93014 1e7pC 256 3.77e+01 1qlaC f.21.2.1 59352 1ym0A 238 3.81e+01 1qkrA 188 3.85e+01 1qkrA a.24.9.1 16628 2c07A 285 3.85e+01 1wpgA 994 3.92e+01