# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1pw4A 451 3.22e-29 f.38.1.1 95198 2gfpA 375 4.87e-29 1pv6A 417 2.94e-20 f.38.1.2 95151 2cfqA 417 7.53e-18 1otsA 465 3.28e-02 f.20.1.1 87415 1kplA 473 1.01e-01 f.20.1.1 68782 1ug3A 339 3.82e-01 2a65A 519 4.43e-01 1o7xB 377 5.23e-01 a.103.1.1 81172 1o7xD 377 5.43e-01 a.103.1.1 81174 1o7xC 377 5.82e-01 a.103.1.1 81173 1rfzA 168 9.09e-01 a.195.1.1 97411 2fm9A 215 1.18e+00 2h79A 269 1.39e+00 1o0wA 252 1.45e+00 a.149.1.1 80751 d.50.1.1 80752 1mznA 240 1.73e+00 a.123.1.1 79704 1kpkA 473 1.76e+00 f.20.1.1 68776 1u19A 349 1.77e+00 1jb0A 755 1.94e+00 1jb0A f.29.1.1 62820 1vgmA 378 2.06e+00 2bs3C 256 2.29e+00 2iu1A 208 2.48e+00 1qlaC 256 3.31e+00 1qlaC f.21.2.1 43722 1s35A 214 3.62e+00 a.7.1.1 98420 a.7.1.1 98421 1i4dA 224 4.04e+00 h.4.7.1 61682 1v96A 149 4.32e+00 1a8i 842 4.57e+00 1a8i c.87.1.4 35490 3mag 307 4.70e+00 3mag c.66.1.25 34205 1qbkB 890 4.85e+00 1qbkB a.118.1.1 19127 2gnxA 365 5.06e+00 2j0wA 449 5.35e+00 16vpA 366 5.39e+00 16vpA d.180.1.1 42601 168lA 164 5.42e+00 1l92 d.2.1.3 36975 1wekA 217 5.66e+00 2at9 247 6.01e+00 1c3wA f.13.1.1 43427 1nw3A 416 6.24e+00 c.66.1.31 86288 1av6A 289 6.33e+00 3mag c.66.1.25 34218 1gw5A 621 6.35e+00 a.118.1.10 70629 1i4tB 224 6.71e+00 h.4.7.1 61730 1lbd 282 6.87e+00 1lbd a.123.1.1 19279 1yewB 247 6.99e+00 1rxqA 178 7.09e+00 a.213.1.1 105118 1qkrA 188 7.44e+00 1qkrA a.24.9.1 16628 1hzxA 349 7.53e+00 1f88A f.13.1.2 61466 2gifA 1057 8.13e+00 1spgB 147 8.41e+00 1cg5B a.1.1.2 15588 1ls1A 295 8.58e+00 a.24.13.1 78170 c.37.1.10 78171 1i4lA 224 8.75e+00 1i49A h.4.7.1 61718 1ffh 294 9.03e+00 1ng1 a.24.13.1 16960 c.37.1.10 32271 2c5kT 95 9.19e+00 1z2iA 358 9.62e+00 1c3wA 222 9.65e+00 1c3wA f.13.1.1 43405 1g3jA 532 9.67e+00 3bct a.118.1.1 19114 1ng1 294 1.00e+01 1ng1 a.24.13.1 16961 c.37.1.10 32272 1wyuA 438 1.02e+01 1uetA 437 1.03e+01 a.160.1.3 99272 d.218.1.7 99273 d.58.16.2 99274 1l9hA 349 1.03e+01 f.13.1.2 73720 1b5sA 242 1.03e+01 1eaf c.43.1.1 32626 1myo 118 1.05e+01 2myo d.211.1.1 19174 169lA 164 1.10e+01 1l92 d.2.1.3 36963 1i49A 224 1.15e+01 1i49A h.4.7.1 61679 1jpnA 296 1.17e+01 a.24.13.1 67039 c.37.1.10 67040 1wpgA 994 1.18e+01 1u7gA 385 1.21e+01 f.44.1.1 107723 1oglA 283 1.26e+01 a.204.1.1 92922 1abbA 828 1.28e+01 1a8i c.87.1.4 35536 1ibrB 462 1.31e+01 1qgrA a.118.1.1 19120 1zs3A 182 1.34e+01 2myo 118 1.34e+01 2myo d.211.1.1 19175 2ng1 293 1.35e+01 1ng1 a.24.13.1 16962 c.37.1.10 32273 1m0kA 262 1.37e+01 f.13.1.1 78344 1g5yA 238 1.40e+01 1lbd a.123.1.1 60294 1r89A 437 1.47e+01 a.160.1.3 97221 d.218.1.7 97222 d.58.16.2 97223 1i7wA 538 1.48e+01 3bct a.118.1.1 61909 1h5uA 842 1.53e+01 1a8i c.87.1.4 60655 1vpt 348 1.53e+01 3mag c.66.1.25 34207 1y82A 157 1.54e+01 1aijM 307 1.55e+01 6prcM f.26.1.1 43462 1unlD 208 1.59e+01 1hkbA 917 1.63e+01 1qhaA c.55.1.3 33479 c.55.1.3 33480 c.55.1.3 33481 c.55.1.3 33482 1qq8A 214 1.63e+01 1qq8A 2at2A 300 1.68e+01 3csuA c.78.1.1 35196 c.78.1.1 35197 1mvcA 240 1.68e+01 a.123.1.1 79499 1foeA 377 1.68e+01 1foeA a.87.1.1 18517 b.55.1.1 26969 1h4lD 147 1.69e+01 a.74.1.1 70873 1vkeA 133 1.69e+01 a.152.1.2 108650 2bptA 861 1.70e+01 1agrE 205 1.72e+01 1agrE a.91.1.1 18538 1y01A 102 1.75e+01 1czaN 917 1.77e+01 1qhaA c.55.1.3 33463 c.55.1.3 33464 c.55.1.3 33465 c.55.1.3 33466 2gmyA 153 1.81e+01 1phnA 162 1.83e+01 1cpcA a.1.1.3 15641 1v39 322 1.85e+01 3mag c.66.1.25 34206 1vp9 322 1.85e+01 3mag c.66.1.25 34210 1y9qA 192 1.85e+01 1hkcA 917 1.88e+01 1qhaA c.55.1.3 33475 c.55.1.3 33476 c.55.1.3 33477 c.55.1.3 33478 1eztA 166 1.88e+01 1agrE a.91.1.1 18541 1dgkN 917 1.98e+01 1qhaA c.55.1.3 33487 c.55.1.3 33488 c.55.1.3 33489 c.55.1.3 33490 1rzhM 307 2.00e+01 f.26.1.1 98165 1w2yA 229 2.04e+01 a.204.1.1 109140 1jdhA 529 2.04e+01 a.118.1.1 66549 1kxpD 458 2.09e+01 a.126.1.1 73160 a.126.1.1 73161 a.126.1.1 73162 1a59 378 2.14e+01 1aj8A a.103.1.1 18902 1f88A 348 2.15e+01 1f88A f.13.1.2 43429 1bgc 174 2.20e+01 1bgc a.26.1.1 16822 1yarO 237 2.22e+01 1qhaA 917 2.22e+01 1qhaA c.55.1.3 33467 c.55.1.3 33468 c.55.1.3 33469 c.55.1.3 33470 1adt 356 2.26e+01 1anv a.54.1.1 17887 g.51.1.1 45362 g.51.1.1 45368 1jr3D 343 2.30e+01 a.80.1.1 63251 c.37.1.20 63252 1y9iA 178 2.31e+01 1t5oA 351 2.34e+01 c.124.1.5 106459 2ga9A 297 2.34e+01 1xiuA 230 2.34e+01 1nz6A 101 2.38e+01 a.2.3.1 86441 1o17A 345 2.44e+01 a.46.2.1 80765 c.27.1.1 80766 1aijS 301 2.48e+01 6prcM f.26.1.1 43465 1kb9C 385 2.49e+01 f.32.1.1 77315 f.21.1.2 77316 1mla 309 2.54e+01 1mla c.19.1.1 31031 d.58.23.1 39383 1dm5A 315 2.55e+01 1avc a.65.1.1 18186 1bf5A 545 2.58e+01 1bg1A a.47.1.1 17766 b.2.5.5 22460 d.93.1.1 40526 1mx4A 168 2.58e+01 d.211.1.1 79640 1go4E 100 2.59e+01 h.1.22.1 70296 1xjzA 233 2.60e+01 1yeyA 444 2.60e+01 2ghcX 261 2.60e+01 1n45A 233 2.62e+01 a.132.1.1 79981 1anv 356 2.67e+01 1anv a.54.1.1 17890 g.51.1.1 45365 g.51.1.1 45371 1th0A 226 2.68e+01 d.3.1.7 106903 1a0p 290 2.69e+01 1a0p a.60.9.1 18105 d.163.1.1 42165 1sesA 421 2.70e+01 1sesA a.2.7.1 15710 d.104.1.1 40710 1ezvC 385 2.71e+01 1be3C f.32.1.1 75833 f.21.1.2 75834 1rfmA 344 2.72e+01 c.122.1.1 97385 1t9xA 1049 2.78e+01 1r71A 178 2.79e+01 a.4.14.1 104823 1gcvB 136 2.81e+01 1cg5B a.1.1.2 15589 1v4aA 440 2.88e+01 a.24.16.4 108350 d.218.1.9 108351 1l7mA 211 2.88e+01 c.108.1.4 73664 2fbwC 141 2.89e+01 1oyeA 1049 2.94e+01 d.58.44.1 87587 d.58.44.1 87588 d.58.44.1 87589 d.58.44.1 87590 d.225.1.1 87591 d.225.1.1 87592 f.35.1.1 87593 f.35.1.1 87594 1ew6A 137 2.95e+01 1ewaA a.1.1.2 15637 1ewaA 137 2.95e+01 1ewaA a.1.1.2 15639 2hneA 436 2.97e+01 2c2nA 339 3.02e+01 1fftB 315 3.04e+01 1cyx b.6.1.2 23025 f.17.2.1 43628 1i3dA 146 3.05e+01 a.1.1.2 61587 1f5sA 211 3.07e+01 1f5sA c.108.1.4 59656 1j97A 211 3.07e+01 1f5sA c.108.1.4 62753 2ac2A 309 3.07e+01 1aeiA 315 3.08e+01 1avc a.65.1.1 18180 1yucA 255 3.08e+01 2csgA 424 3.09e+01 1bccE 196 3.12e+01 1rie b.33.1.1 24431 f.23.12.1 43699 1hx1B 114 3.14e+01 1hx1B a.7.7.1 61350 1nt4A 391 3.15e+01 c.60.1.2 92102 1colA 204 3.15e+01 1a87 f.1.1.1 43378 1oafA 261 3.15e+01 a.93.1.1 86734 1lfpA 249 3.27e+01 e.39.1.1 73885 1ihbA 162 3.38e+01 1bd8 d.211.1.1 19161 2ac4A 309 3.41e+01 1dozA 309 3.41e+01 1ak1 c.92.1.1 35592 1lfkA 398 3.44e+01 a.104.1.1 77926 1qzzA 374 3.47e+01 a.4.5.29 96719 c.66.1.12 96720 1uohA 226 3.49e+01 d.211.1.1 99690 1eyvA 156 3.55e+01 1eyvA a.79.1.1 18446 1wy9A 147 3.55e+01 2gd5A 179 3.56e+01 1n0qA 93 3.58e+01 k.37.1.1 79754 2azeA 155 3.63e+01 1iwgA 1053 3.68e+01 d.58.44.1 76874 d.58.44.1 76875 d.58.44.1 76876 d.58.44.1 76877 d.225.1.1 76878 d.225.1.1 76879 f.35.1.1 76880 f.35.1.1 76881 1jb0L 154 3.69e+01 1jb0L f.31.1.1 62829 1jli 112 3.71e+01 1jli a.26.1.2 16884 1ak1 310 3.72e+01 1ak1 c.92.1.1 35594 1dxtB 147 3.72e+01 1abwA a.1.1.2 15450 2avpA 70 3.75e+01 2tct 207 3.83e+01 2tct a.4.1.9 16063 a.121.1.1 19240 1babB 146 3.84e+01 1abwA a.1.1.2 15414 1i1gA 141 3.86e+01 a.4.5.32 65982 d.58.4.2 65983 1k87A 669 3.93e+01 a.176.1.1 77286 c.1.23.2 77287 1n46A 258 3.95e+01 a.123.1.1 85315 1dkfA 233 3.96e+01 3erdA a.123.1.1 19280 1b33B 161 3.99e+01 1qgwC a.1.1.3 15650 1ew6B 137 3.99e+01 1ewaA a.1.1.2 15638