Best Alignments for YGR223C

To select the top models, SAM_T02 generates pairwise alignments of the target sequence and the best-scoring templates. The alignments with the best E-values are presented here.

Warning: E-values smaller than about 0.001 may be overly optimistic.

A2M alignment Template E-value Alignment cost FSSP rep SCOP Domain(s)
1erjA/YGR223C-1erjA-local-str-1.5-adpstyle5.a2m 1.3559e-261.2803e-47 1erjA b.69.4.1
1erjA/YGR223C-1erjA-global-str-1.5-adpstyle5.a2m 1.3559e-262.1491e-47 1erjA b.69.4.1
1gotB/YGR223C-1gotB-local-str-1.5-adpstyle5.a2m 2.6099e-253.3702e-46 1tbgA b.69.4.1
1tbgA/YGR223C-1tbgA-local-str-1.5-adpstyle5.a2m 3.0360e-255.1035e-46 1tbgA b.69.4.1
1gotB/YGR223C-1gotB-global-str-1.5-adpstyle5.a2m 2.6099e-258.6833e-46 1tbgA b.69.4.1
1tbgA/YGR223C-1tbgA-global-str-1.5-adpstyle5.a2m 3.0360e-258.7076e-46 1tbgA b.69.4.1
1erjA/YGR223C-1erjA-local-str-0.3-adpstyle5.a2m 1.3559e-262.3804e-40 1erjA b.69.4.1
1erjA/YGR223C-1erjA-global-str-0.3-adpstyle5.a2m 1.3559e-263.3636e-40 1erjA b.69.4.1
1erjA/YGR223C-1erjA-local-alpha-0.3-adpstyle5.a2m 1.3559e-266.6634e-40 1erjA b.69.4.1
1erjA/YGR223C-1erjA-global-alpha-0.3-adpstyle5.a2m 1.3559e-261.3394e-39 1erjA b.69.4.1
1erjA/YGR223C-1erjA-local-dssp-ebghstl-0.3-adpstyle5.a2m 1.3559e-261.1340e-38 1erjA b.69.4.1
1erjA/YGR223C-1erjA-global-dssp-ebghstl-0.3-adpstyle5.a2m 1.3559e-261.8753e-38 1erjA b.69.4.1
1erjA/YGR223C-1erjA-local-stride-ebghtl-0.3-adpstyle5.a2m 1.3559e-262.1356e-38 1erjA b.69.4.1
1erjA/YGR223C-1erjA-global-stride-ebghtl-0.3-adpstyle5.a2m 1.3559e-263.1089e-38 1erjA b.69.4.1
1gotB/YGR223C-1gotB-local-str-0.3-adpstyle5.a2m 2.6099e-258.7157e-38 1tbgA b.69.4.1
1tbgA/YGR223C-1tbgA-local-str-0.3-adpstyle5.a2m 3.0360e-251.4791e-37 1tbgA b.69.4.1
1gotB/YGR223C-1gotB-global-str-0.3-adpstyle5.a2m 2.6099e-251.9528e-37 1tbgA b.69.4.1
1tbgA/YGR223C-1tbgA-global-str-0.3-adpstyle5.a2m 3.0360e-252.5396e-37 1tbgA b.69.4.1
1gotB/YGR223C-1gotB-global-alpha-0.3-adpstyle5.a2m 2.6099e-254.1168e-37 1tbgA b.69.4.1
1tbgA/YGR223C-1tbgA-global-alpha-0.3-adpstyle5.a2m 3.0360e-254.2820e-37 1tbgA b.69.4.1
1tbgA/YGR223C-1tbgA-local-alpha-0.3-adpstyle5.a2m 3.0360e-254.7187e-37 1tbgA b.69.4.1
1gotB/YGR223C-1gotB-local-alpha-0.3-adpstyle5.a2m 2.6099e-254.9050e-37 1tbgA b.69.4.1
1gotB/YGR223C-1gotB-local-dssp-ebghstl-0.3-adpstyle5.a2m 2.6099e-257.6148e-37 1tbgA b.69.4.1
1gxrA/YGR223C-1gxrA-local-str-1.5-adpstyle5.a2m 5.7059e-208.5699e-37
1gxrA/YGR223C-1gxrA-global-str-1.5-adpstyle5.a2m 5.7059e-209.1807e-37
1tbgA/YGR223C-1tbgA-local-dssp-ebghstl-0.3-adpstyle5.a2m 3.0360e-251.4692e-36 1tbgA b.69.4.1
1gotB/YGR223C-1gotB-local-stride-ebghtl-0.3-adpstyle5.a2m 2.6099e-252.3928e-36 1tbgA b.69.4.1
1gotB/YGR223C-1gotB-global-dssp-ebghstl-0.3-adpstyle5.a2m 2.6099e-252.8726e-36 1tbgA b.69.4.1
1tbgA/YGR223C-1tbgA-local-stride-ebghtl-0.3-adpstyle5.a2m 3.0360e-253.5267e-36 1tbgA b.69.4.1
1tbgA/YGR223C-1tbgA-global-dssp-ebghstl-0.3-adpstyle5.a2m 3.0360e-254.9157e-36 1tbgA b.69.4.1
1gotB/YGR223C-1gotB-global-stride-ebghtl-0.3-adpstyle5.a2m 2.6099e-255.3699e-36 1tbgA b.69.4.1
1tbgA/YGR223C-1tbgA-global-stride-ebghtl-0.3-adpstyle5.a2m 3.0360e-255.4800e-36 1tbgA b.69.4.1
1erjA/YGR223C-1erjA-local-adpstyle5.a2m 1.3559e-267.2158e-35 1erjA b.69.4.1
1erjA/YGR223C-1erjA-local-adpstyle1.a2m 1.3559e-267.2158e-35 1erjA b.69.4.1
1erjA/YGR223C-1erjA-global-adpstyle5.a2m 1.3559e-261.1236e-34 1erjA b.69.4.1
1erjA/YGR223C-1erjA-global-adpstyle1.a2m 1.3559e-261.1236e-34 1erjA b.69.4.1
1gotB/YGR223C-1gotB-global-adpstyle1.a2m 2.6099e-251.5686e-32 1tbgA b.69.4.1
1gotB/YGR223C-1gotB-global-adpstyle5.a2m 2.6099e-251.5686e-32 1tbgA b.69.4.1
1tbgA/YGR223C-1tbgA-global-adpstyle5.a2m 3.0360e-251.6670e-32 1tbgA b.69.4.1
1tbgA/YGR223C-1tbgA-global-adpstyle1.a2m 3.0360e-251.6670e-32 1tbgA b.69.4.1
1gotB/YGR223C-1gotB-local-adpstyle5.a2m 2.6099e-252.1018e-32 1tbgA b.69.4.1
1gotB/YGR223C-1gotB-local-adpstyle1.a2m 2.6099e-252.1018e-32 1tbgA b.69.4.1
1tbgA/YGR223C-1tbgA-local-adpstyle5.a2m 3.0360e-252.3979e-32 1tbgA b.69.4.1
1tbgA/YGR223C-1tbgA-local-adpstyle1.a2m 3.0360e-252.3979e-32 1tbgA b.69.4.1
1a0rB/YGR223C-1a0rB-global-adpstyle5.a2m 1.9293e-247.4390e-32 1tbgA b.69.4.1
1a0rB/YGR223C-1a0rB-global-adpstyle1.a2m 1.9293e-247.4390e-32 1tbgA b.69.4.1
1a0rB/YGR223C-1a0rB-local-adpstyle5.a2m 1.9293e-241.1135e-31 1tbgA b.69.4.1
1a0rB/YGR223C-1a0rB-local-adpstyle1.a2m 1.9293e-241.1135e-31 1tbgA b.69.4.1
1gxrA/YGR223C-1gxrA-local-str-0.3-adpstyle5.a2m 5.7059e-209.8060e-30
1gxrA/YGR223C-1gxrA-global-str-0.3-adpstyle5.a2m 5.7059e-201.9133e-29
1gxrA/YGR223C-1gxrA-global-alpha-0.3-adpstyle5.a2m 5.7059e-201.5238e-28
1gxrA/YGR223C-1gxrA-local-alpha-0.3-adpstyle5.a2m 5.7059e-202.1892e-28
1gxrA/YGR223C-1gxrA-local-dssp-ebghstl-0.3-adpstyle5.a2m 5.7059e-202.3962e-28
1gxrA/YGR223C-1gxrA-global-dssp-ebghstl-0.3-adpstyle5.a2m 5.7059e-203.6835e-28
1gxrA/YGR223C-1gxrA-local-stride-ebghtl-0.3-adpstyle5.a2m 5.7059e-203.9298e-28
1gxrA/YGR223C-1gxrA-global-stride-ebghtl-0.3-adpstyle5.a2m 5.7059e-201.4260e-27
1erjA/1erjA-YGR223C-global-adpstyle1.a2m 1.3559e-265.5504e-25 1erjA b.69.4.1
1erjA/1erjA-YGR223C-global-adpstyle5.a2m 1.3559e-265.5504e-25 1erjA b.69.4.1
1k8kC/YGR223C-1k8kC-local-str-1.5-adpstyle5.a2m 6.6623e-159.6572e-25 b.69.4.1
1gxrA/YGR223C-1gxrA-global-adpstyle1.a2m 5.7059e-201.1658e-24
1gxrA/YGR223C-1gxrA-global-adpstyle5.a2m 5.7059e-201.1658e-24
1k8kC/YGR223C-1k8kC-global-str-1.5-adpstyle5.a2m 6.6623e-151.4792e-24 b.69.4.1
1gotB/1gotB-YGR223C-global-adpstyle5.a2m 2.6099e-252.2564e-24 1tbgA b.69.4.1
1gotB/1gotB-YGR223C-global-adpstyle1.a2m 2.6099e-252.2564e-24 1tbgA b.69.4.1
1erjA/1erjA-YGR223C-local-adpstyle5.a2m 1.3559e-262.2843e-24 1erjA b.69.4.1
1erjA/1erjA-YGR223C-local-adpstyle1.a2m 1.3559e-262.2843e-24 1erjA b.69.4.1
1tbgA/1tbgA-YGR223C-global-adpstyle1.a2m 3.0360e-252.5899e-24 1tbgA b.69.4.1
1tbgA/1tbgA-YGR223C-global-adpstyle5.a2m 3.0360e-252.5899e-24 1tbgA b.69.4.1
1gxrA/YGR223C-1gxrA-local-adpstyle1.a2m 5.7059e-203.4035e-24
1gxrA/YGR223C-1gxrA-local-adpstyle5.a2m 5.7059e-203.4035e-24
1gotB/1gotB-YGR223C-local-adpstyle1.a2m 2.6099e-251.3940e-23 1tbgA b.69.4.1
1gotB/1gotB-YGR223C-local-adpstyle5.a2m 2.6099e-251.3940e-23 1tbgA b.69.4.1
1tbgA/1tbgA-YGR223C-local-adpstyle5.a2m 3.0360e-251.4087e-23 1tbgA b.69.4.1
1tbgA/1tbgA-YGR223C-local-adpstyle1.a2m 3.0360e-251.4087e-23 1tbgA b.69.4.1
1erjA/1erjA-YGR223C-fssp-global-adpstyle5.a2m 1.3559e-262.7482e-23 1erjA b.69.4.1
1erjA/1erjA-YGR223C-fssp-local-adpstyle5.a2m 1.3559e-264.3894e-23 1erjA b.69.4.1
1erjA/YGR223C-1erjA-simplesw-adpstyle5.a2m 1.3559e-261.1898e-22 1erjA b.69.4.1
1erjA/YGR223C-1erjA-simplesw-adpstyle1.a2m 1.3559e-261.1898e-22 1erjA b.69.4.1
1gotB/1tbgA-YGR223C-fssp-global-adpstyle5.a2m 2.6099e-256.6947e-22 1tbgA b.69.4.1
1tbgA/1tbgA-YGR223C-fssp-global-adpstyle5.a2m 3.0360e-257.5938e-22 1tbgA b.69.4.1
1gotB/1tbgA-YGR223C-fssp-local-adpstyle5.a2m 2.6099e-259.9060e-22 1tbgA b.69.4.1
1tbgA/1tbgA-YGR223C-fssp-local-adpstyle5.a2m 3.0360e-251.1236e-21 1tbgA b.69.4.1
1k8kC/YGR223C-1k8kC-global-alpha-0.3-adpstyle5.a2m 6.6623e-151.6146e-21 b.69.4.1
1k8kC/YGR223C-1k8kC-global-str-0.3-adpstyle5.a2m 6.6623e-151.7108e-21 b.69.4.1
1k8kC/YGR223C-1k8kC-local-str-0.3-adpstyle5.a2m 6.6623e-152.5957e-21 b.69.4.1
1a0rB/1tbgA-YGR223C-fssp-global-adpstyle5.a2m 1.9293e-243.5458e-21 1tbgA b.69.4.1
1gotB/YGR223C-1gotB-simplesw-adpstyle5.a2m 2.6099e-255.0316e-21 1tbgA b.69.4.1
1gotB/YGR223C-1gotB-simplesw-adpstyle1.a2m 2.6099e-255.0316e-21 1tbgA b.69.4.1
1a0rB/1tbgA-YGR223C-fssp-local-adpstyle5.a2m 1.9293e-245.2466e-21 1tbgA b.69.4.1
1tbgA/YGR223C-1tbgA-simplesw-adpstyle1.a2m 3.0360e-255.6416e-21 1tbgA b.69.4.1
1tbgA/YGR223C-1tbgA-simplesw-adpstyle5.a2m 3.0360e-255.6416e-21 1tbgA b.69.4.1
1k8kC/YGR223C-1k8kC-local-alpha-0.3-adpstyle5.a2m 6.6623e-156.4489e-21 b.69.4.1
1k8kC/YGR223C-1k8kC-global-dssp-ebghstl-0.3-adpstyle5.a2m 6.6623e-151.0395e-20 b.69.4.1
1k8kC/YGR223C-1k8kC-local-dssp-ebghstl-0.3-adpstyle5.a2m 6.6623e-151.7893e-20 b.69.4.1
1a0rB/YGR223C-1a0rB-simplesw-adpstyle1.a2m 1.9293e-242.6682e-20 1tbgA b.69.4.1
1a0rB/YGR223C-1a0rB-simplesw-adpstyle5.a2m 1.9293e-242.6682e-20 1tbgA b.69.4.1
1k8kC/YGR223C-1k8kC-global-stride-ebghtl-0.3-adpstyle5.a2m 6.6623e-152.7698e-20 b.69.4.1
1k8kC/YGR223C-1k8kC-local-stride-ebghtl-0.3-adpstyle5.a2m 6.6623e-153.8153e-20 b.69.4.1
1gxrA/1gxrA-YGR223C-global-adpstyle5.a2m 5.7059e-202.1005e-19
1gxrA/1gxrA-YGR223C-global-adpstyle1.a2m 5.7059e-202.1005e-19

Please cite: Karplus, K. and Karchin, R. and Barrett, C. and Tu, S. and Cline, M. and Diekhans, M. and Grate, L. and Casper, J. and Hughey, R. ``What is the value added by human intervention in protein structure prediction?'' Proteins: Structure Function and Genetics 45(S5):86-91,2001