%  SAM: /projects/compbio/bin/i686/hmmscore v3.3.2 (February, 2001) compiled 06/24/02_10:50:12
%  (c) 1992-2001 Regents of the University of California, Santa Cruz
%
%          Sequence Alignment and Modeling Software System
%         http://www.cse.ucsc.edu/research/compbio/sam.html
%
% ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
% R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
%  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
% K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
%  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
% A. Krogh et al., Hidden Markov models in computational biology:
%  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
% ---------------------------------------------------------------------
%  YGR219W.t2k-w0.5   Host: cc60    Tue Nov 12 16:43:15 2002
%  karplus            Dir:  /projects/compbio/experiments/protein-predict/yeast/YGR2/YGR219W
% ---------------------------------------------------------------------
% Inserted Files:  YGR219W.t2k-w0.5.mod
% Database Files:  /projects/compbio/experiments/models.97/indexes/t2k.x-seqs
%

MODLIBMOD YGR219W.t2k-w0.5.mod YGR219W.t2k-w0.5 model number 1
% Calibration data for 7323 database sequences
% 3599 of 7323 scores > calibrate_threshold (      0) used.
insert YGR219W.t2k-w0.5.mod
lambda 3.409598
tau 0.713648
sw 2
dpstyle 0
jumpinprob 1.000000
jumpoutprob 1.000000
subtractnull 4
FIMmethodscore -6
insertmethodscore 0
adjust_score 2
ENDMODLIBMOD