# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1kpf 126 1.32e+00 1kpf d.13.1.1 37507 1kpeA 126 1.41e+00 1kpf d.13.1.1 37508 1dkgB 197 1.44e+00 1dkgA b.73.1.1 27813 h.1.9.1 45627 1dkgA 197 1.51e+00 1dkgA b.73.1.1 27812 h.1.9.1 45626 1jhfA 202 2.94e+00 a.4.5.2 63057 b.87.1.1 63058 1blxA 326 3.26e+00 1hcl d.144.1.1 41596 1hmr 132 6.36e+00 1hmt b.60.1.2 27170 1hmt 132 6.67e+00 1hmt b.60.1.2 27169 1hms 132 6.82e+00 1hmt b.60.1.2 27168 1eg3A 261 7.42e+00 1eg3A a.39.1.7 17376 a.39.1.7 17377 b.72.1.1 27805 1jrhI 108 8.52e+00 1jrhI b.1.2.1 22059 1pmt 203 1.03e+01 1a0fA a.45.1.1 17740 c.47.1.5 33034 1a8s 273 1.11e+01 1brt c.69.1.12 34710 1db3A 372 1.22e+01 1db3A c.2.1.2 29813 1edhA 226 1.26e+01 1edhA b.1.6.1 22198 b.1.6.1 22199 1bwyA 132 1.35e+01 1hmt b.60.1.2 27172 1ewfA 456 1.43e+01 1bp1 d.83.1.1 40024 d.83.1.1 40025 1rypE 242 1.47e+01 1rypE d.153.1.4 41936 1m8aA 70 1.51e+01 1bp1 456 1.57e+01 1bp1 d.83.1.1 40026 d.83.1.1 40027 1ihfA 99 1.76e+01 1huuA a.55.1.1 17893 1cbn 46 1.79e+01 1cbn g.13.1.1 44619 1ccm 46 1.79e+01 1cbn g.13.1.1 44623 1ejgA 46 1.79e+01 1cbn g.13.1.1 44618 1qh4A 380 1.87e+01 1qh4A a.83.1.1 18462 d.128.1.2 41197 1rrpB 134 1.89e+01 1rrpB b.55.1.3 26995 1c0dA 358 2.39e+01 1eceA c.1.8.3 28815 1fyhB 229 2.65e+01 1jrhI b.1.2.1 22055 b.1.2.1 22056 1bg4 302 2.89e+01 1taxA c.1.8.3 28806 1b31A 302 2.89e+01 1taxA c.1.8.3 28892 1f3lA 321 2.89e+01 1g6q2 c.66.1.6 59630 2napA 723 3.06e+01 2napA b.52.2.2 26926 c.81.1.1 35334 1gh7A 419 3.10e+01 b.1.2.1 65194 b.1.2.1 65195 b.1.2.1 65196 b.1.2.1 65197 1c01A 76 3.13e+01 1c01A b.11.1.5 23633 1fg9C 245 3.15e+01 1jrhI b.1.2.1 22060 b.1.2.1 22061 1cnr 46 3.16e+01 1cbn g.13.1.1 44621 1l6sA 323 3.20e+01 1i8jA 323 3.22e+01 1b4kA c.1.10.3 61968 1bmv2 374 3.36e+01 1bmv2 1lpuA 332 3.42e+01 1ik6A 369 3.44e+01 c.36.1.3 66174 c.48.1.2 66175 1b8tA 192 3.45e+01 1b8tA g.39.1.3 45135 g.39.1.3 45136 g.39.1.3 45137 g.39.1.3 45138 1cnuA 137 3.51e+01 1cof d.109.1.2 40862 1qsmA 152 3.60e+01 1qsmA d.108.1.1 40808 2sniI 83 3.63e+01 2sniI d.40.1.1 38573 1jn8B 273 3.68e+01 c.68.1.2 66928 1lmq 129 3.68e+01 3lzt d.2.1.2 36588 1quqA 129 3.69e+01 1quqA b.40.4.3 25303 1j8wB 273 3.82e+01 c.68.1.2 66441 1k12A 158 3.84e+01