# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1dkgA 197 1.93e-01 1dkgA b.73.1.1 27812 h.1.9.1 45626 1dkgB 197 2.14e-01 1dkgA b.73.1.1 27813 h.1.9.1 45627 1pmt 203 6.13e-01 1a0fA a.45.1.1 17740 c.47.1.5 33034 1hmr 132 1.09e+00 1hmt b.60.1.2 27170 1hms 132 1.29e+00 1hmt b.60.1.2 27168 1hmt 132 1.45e+00 1hmt b.60.1.2 27169 1jhfA 202 1.49e+00 a.4.5.2 63057 b.87.1.1 63058 1gh7A 419 1.96e+00 b.1.2.1 65194 b.1.2.1 65195 b.1.2.1 65196 b.1.2.1 65197 1db3A 372 2.81e+00 1db3A c.2.1.2 29813 1eg3A 261 3.33e+00 1eg3A a.39.1.7 17376 a.39.1.7 17377 b.72.1.1 27805 1qh4A 380 3.98e+00 1qh4A a.83.1.1 18462 d.128.1.2 41197 1bmv2 374 4.75e+00 1bmv2 1bwyA 132 5.21e+00 1hmt b.60.1.2 27172 1f3lA 321 5.97e+00 1g6q2 c.66.1.6 59630 1jrhI 108 6.21e+00 1jrhI b.1.2.1 22059 8pchA 220 6.83e+00 1cs8A d.3.1.1 37084 1k4wA 252 7.23e+00 1edhA 226 7.34e+00 1edhA b.1.6.1 22198 b.1.6.1 22199 1kpeA 126 8.06e+00 1kpf d.13.1.1 37508 1jn8B 273 8.50e+00 c.68.1.2 66928 1c0dA 358 8.75e+00 1eceA c.1.8.3 28815 1fg9C 245 8.84e+00 1jrhI b.1.2.1 22060 b.1.2.1 22061 1m8aA 70 8.91e+00 1kpf 126 9.00e+00 1kpf d.13.1.1 37507 1ermA 263 9.47e+00 1btl e.3.1.1 42690 1btl 263 9.75e+00 1btl e.3.1.1 42691 1fgxA 288 1.00e+01 1fgxA c.68.1.2 34508 1j8wB 273 1.01e+01 c.68.1.2 66441 1fqgA 263 1.04e+01 1btl e.3.1.1 42699 1m40A 263 1.06e+01 1lmq 129 1.17e+01 3lzt d.2.1.2 36588 1irk 306 1.19e+01 1fmk d.144.1.2 41703 1cnuA 137 1.24e+01 1cof d.109.1.2 40862 1ewfA 456 1.30e+01 1bp1 d.83.1.1 40024 d.83.1.1 40025 1bp1 456 1.33e+01 1bp1 d.83.1.1 40026 d.83.1.1 40027 1ihrA 76 1.34e+01 1ihrA d.191.1.1 62392 1b63A 333 1.41e+01 1b63A d.14.1.3 37566 d.122.1.2 41107 1lpuA 332 1.48e+01 1fyhB 229 1.52e+01 1jrhI b.1.2.1 22055 b.1.2.1 22056 2napA 723 1.55e+01 2napA b.52.2.2 26926 c.81.1.1 35334 1i8jA 323 2.00e+01 1b4kA c.1.10.3 61968 1rrpB 134 2.03e+01 1rrpB b.55.1.3 26995 1ir3A 306 2.03e+01 1fmk d.144.1.2 41702 1k12A 158 2.07e+01 1cnr 46 2.10e+01 1cbn g.13.1.1 44621 1gcqC 70 2.15e+01 1gcpA b.34.2.1 60436 1ccm 46 2.21e+01 1cbn g.13.1.1 44623 1rypE 242 2.21e+01 1rypE d.153.1.4 41936 1cbn 46 2.28e+01 1cbn g.13.1.1 44619 1ejgA 46 2.28e+01 1cbn g.13.1.1 44618 1jwhA 337 2.36e+01 1gcpA 70 2.39e+01 1gcpA b.34.2.1 60430 1caj 260 2.41e+01 2cba b.74.1.1 27841 1l6sA 323 2.46e+01 2cba 260 2.54e+01 2cba b.74.1.1 27821 1fr7A 260 2.67e+01 2cba b.74.1.1 27828 1k6zA 141 2.82e+01 d.198.1.1 68247 1blxA 326 2.89e+01 1hcl d.144.1.1 41596 1eceA 358 2.98e+01 1eceA c.1.8.3 28813 1esmA 316 2.99e+01 1esmA c.37.1.6 31953 1aokB 122 3.05e+01 1poa a.133.1.2 19561 1dcoA 104 3.10e+01 1dcpA d.74.1.1 39680 1boeA 47 3.12e+01 1boeA g.3.9.1 44187 1f93A 104 3.14e+01 1dcpA d.74.1.1 39688 1dcpA 104 3.17e+01 1dcpA d.74.1.1 39672 1bg4 302 3.22e+01 1taxA c.1.8.3 28806 1b31A 302 3.31e+01 1taxA c.1.8.3 28892 1ecxA 384 3.46e+01 1ecxA c.67.1.3 34431 1f97A 212 3.53e+01 1f97A b.1.1.1 19763 b.1.1.4 21764 1g0hA 252 3.57e+01 1dk4A e.7.1.1 60171 1pex 207 3.61e+01 1gen b.66.1.1 27540 1gy9A 283 3.82e+01 1ik6A 369 3.96e+01 c.36.1.3 66174 c.48.1.2 66175 1rie 129 3.99e+01 1rie b.33.1.1 24427 1h59B 54 3.99e+01 1exzA 141 4.00e+01 1exzA a.26.1.2 16877