# List of top-scoring protein chains for t2k-100-30-alpha hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1blxA 326 7.93e-01 1hcl d.144.1.1 41596 1hmt 132 1.15e+00 1hmt b.60.1.2 27169 1hms 132 1.33e+00 1hmt b.60.1.2 27168 1hmr 132 1.77e+00 1hmt b.60.1.2 27170 1db3A 372 1.89e+00 1db3A c.2.1.2 29813 1eg3A 261 3.50e+00 1eg3A a.39.1.7 17376 a.39.1.7 17377 b.72.1.1 27805 1kpeA 126 4.53e+00 1kpf d.13.1.1 37508 1bwyA 132 5.53e+00 1hmt b.60.1.2 27172 1ik6A 369 5.96e+00 c.36.1.3 66174 c.48.1.2 66175 1c0dA 358 6.08e+00 1eceA c.1.8.3 28815 1jhfA 202 6.42e+00 a.4.5.2 63057 b.87.1.1 63058 1lmq 129 6.46e+00 3lzt d.2.1.2 36588 1f97A 212 7.19e+00 1f97A b.1.1.1 19763 b.1.1.4 21764 1bp1 456 7.75e+00 1bp1 d.83.1.1 40026 d.83.1.1 40027 1ewfA 456 8.47e+00 1bp1 d.83.1.1 40024 d.83.1.1 40025 1bmv2 374 9.76e+00 1bmv2 1fpqA 372 1.08e+01 1fpqA a.4.5.29 59947 c.66.1.12 59948 1eceA 358 1.10e+01 1eceA c.1.8.3 28813 1erjA 393 1.10e+01 1erjA b.69.4.1 27660 1fp1D 372 1.11e+01 1fpqA a.4.5.29 59939 c.66.1.12 59940 1paz 123 1.12e+01 1bqk b.6.1.1 22878 1boeA 47 1.19e+01 1boeA g.3.9.1 44187 1dkgA 197 1.21e+01 1dkgA b.73.1.1 27812 h.1.9.1 45626 1edhA 226 1.30e+01 1edhA b.1.6.1 22198 b.1.6.1 22199 1pex 207 1.33e+01 1gen b.66.1.1 27540 1rypE 242 1.34e+01 1rypE d.153.1.4 41936 2napA 723 1.37e+01 2napA b.52.2.2 26926 c.81.1.1 35334 1aokB 122 1.38e+01 1poa a.133.1.2 19561 1jrhI 108 1.38e+01 1jrhI b.1.2.1 22059 1quqA 129 1.53e+01 1quqA b.40.4.3 25303 1lpuA 332 1.55e+01 1dkgB 197 1.68e+01 1dkgA b.73.1.1 27813 h.1.9.1 45627 1b2pA 119 1.69e+01 1b2pA b.78.1.1 27998 1h59B 54 1.72e+01 1bg4 302 1.73e+01 1taxA c.1.8.3 28806 1im8A 244 1.74e+01 c.66.1.14 66212 1kpf 126 1.84e+01 1kpf d.13.1.1 37507 1mbmA 198 1.89e+01 2sgpE 185 2.00e+01 1qq4A b.47.1.1 25825 1cnr 46 2.15e+01 1cbn g.13.1.1 44621 1cbn 46 2.18e+01 1cbn g.13.1.1 44619 1ejgA 46 2.18e+01 1cbn g.13.1.1 44618 1m8aA 70 2.22e+01 1sgpE 185 2.23e+01 1qq4A b.47.1.1 25816 1cqkA 101 2.23e+01 1cqkA b.1.1.2 21547 1igtB 444 2.24e+01 1igtB b.1.1.1 19765 b.1.1.2 20867 b.1.1.2 20868 b.1.1.2 20869 1f6bA 198 2.25e+01 c.37.1.8 64986 1e5rA 290 2.27e+01 1e5rA b.82.2.4 59276 1qcsA 211 2.30e+01 1qcsA b.52.2.3 26927 d.31.1.1 38461 1b31A 302 2.31e+01 1taxA c.1.8.3 28892 1igtD 444 2.32e+01 1igtB b.1.1.1 19767 b.1.1.2 20871 b.1.1.2 20872 b.1.1.2 20873 1qh4A 380 2.36e+01 1qh4A a.83.1.1 18462 d.128.1.2 41197 2gliA 160 2.58e+01 2gliA g.37.1.1 45041 g.37.1.1 45042 g.37.1.1 45043 g.37.1.1 45044 g.37.1.1 45045 1ewqA 765 2.73e+01 1ewqA a.113.1.1 19069 c.37.1.12 32383 c.55.6.1 33740 d.75.2.1 39743 1auyA 189 2.83e+01 1auyA b.10.1.2 23311 2pna 104 2.93e+01 1qadA d.93.1.1 40501 1gcvA 140 2.98e+01 1cg5B a.1.1.2 15410 1ccm 46 3.10e+01 1cbn g.13.1.1 44623 1js8A 394 3.13e+01 a.86.1.1 67219 b.1.1.5 67220 1lnh 857 3.17e+01 1yge a.119.1.1 19237 b.12.1.1 23637 1k4wA 252 3.27e+01 1gsmA 210 3.34e+01 b.1.1.4 65535 b.1.1.4 65536 1regX 122 3.36e+01 1regX d.58.27.1 39406 1fyhB 229 3.43e+01 1jrhI b.1.2.1 22055 b.1.2.1 22056 1eaf 243 3.55e+01 1eaf c.43.1.1 32617 1zxq 192 3.59e+01 1zxq b.1.1.3 21657 b.1.1.4 21693 1gh7A 419 3.59e+01 b.1.2.1 65194 b.1.2.1 65195 b.1.2.1 65196 b.1.2.1 65197 2tmkA 216 3.73e+01 3tmkA c.37.1.1 31928 1jatB 138 3.76e+01 1jatB d.20.1.1 62819 1f3lA 321 3.82e+01 1g6q2 c.66.1.6 59630 1j8wB 273 3.88e+01 c.68.1.2 66441 1b57A 358 3.92e+01 1dosA c.1.10.2 29177 1lid 131 3.93e+01 1hmt b.60.1.2 27184 1fg9C 245 3.95e+01 1jrhI b.1.2.1 22060 b.1.2.1 22061 1b6tA 159 3.96e+01 1b6tA c.26.1.3 31600