# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1qbkB 890 4.36e-93 1qbkB a.118.1.1 19127 1wa5C 960 1.23e-54 1w9cA 321 3.04e-51 1qgrA 876 4.78e-30 1qgrA a.118.1.1 19119 1ibrB 462 5.35e-24 1qgrA a.118.1.1 19120 1bk6A 422 1.33e-06 1bk5A a.118.1.1 19133 1b3uA 588 2.24e-06 1b3uA a.118.1.2 19135 1ee4A 423 3.41e-06 1ee4A a.118.1.1 19128 1bk5A 422 7.82e-06 1bk5A a.118.1.1 19130 1wa5B 530 1.30e-05 1gw5B 591 8.29e-04 a.118.1.10 70630 1gw5A 621 2.53e-03 a.118.1.10 70629 1fo3A 460 3.63e-01 1dl2A a.102.2.1 18845 1gweA 503 3.67e-01 e.5.1.1 70667 1jplA 171 5.19e-01 a.118.9.2 67027 1fiy 883 5.56e-01 1fiy c.1.12.3 29307 1jqnA 883 5.60e-01 c.1.12.3 77159 1hbzA 498 5.76e-01 1cf9A e.5.1.1 60937 1qb4A 883 8.46e-01 c.1.12.3 74640 1jk0B 345 1.87e+00 a.25.1.2 63143 1oyzA 280 1.97e+00 1q4mA 221 2.14e+00 1i37A 260 2.59e+00 1a28A a.123.1.1 61583 1sqgA 429 2.70e+00 5eat 548 2.92e+00 5eat a.102.4.1 18853 a.128.1.3 19445 1dk5A 322 3.48e+00 1dk5A a.65.1.1 18192 1r9kA 172 3.70e+00 1hu3A 260 3.74e+00 1hu3A a.118.1.2 19137 1iioA 84 5.18e+00 a.39.4.1 66150 1btkB 169 5.19e+00 1btkA b.55.1.1 26960 1sva1 361 5.50e+00 1vpsA 1g38A 393 6.09e+00 2admA c.66.1.27 60235 1by1A 209 6.64e+00 1by1A a.87.1.1 18515 1ib2A 349 6.79e+00 1ib2A a.118.1.8 62141 1hqvA 191 7.01e+00 1hqvA a.39.1.8 61160 1btkA 169 7.12e+00 1btkA b.55.1.1 26959 1efm 393 7.22e+00 1efcA c.37.1.8 64732 1upkA 341 7.79e+00 1sw6A 327 7.88e+00 1sw6A d.211.1.1 19176 1wer 334 8.12e+00 1wer a.116.1.2 19108 1bd3A 243 8.49e+00 1bd3A c.61.1.1 34098 1t7rA 269 8.67e+00 5eau 548 8.82e+00 5eat a.102.4.1 18851 a.128.1.3 19443 1jfmA 174 9.32e+00 d.19.1.1 66640 1jwgA 147 1.01e+01 a.118.9.2 71911 1aqjA 421 1.14e+01 2admA c.66.1.27 34242 1gheA 177 1.17e+01 d.108.1.1 76222 1e4mM 501 1.20e+01 1e70M c.1.8.4 59226 1e6qM 501 1.24e+01 1e70M c.1.8.4 28920 1ujkA 147 1.25e+01 1e70M 501 1.26e+01 1e70M c.1.8.4 28926 2admA 421 1.27e+01 2admA c.66.1.27 34238 1o9iA 266 1.30e+01 1elkA 157 1.31e+01 1dvpA a.118.9.2 19217 1kv5A 250 1.42e+01 c.1.1.1 73052 1jkvA 266 1.45e+01 a.25.1.2 71719 1io0A 185 1.46e+01 c.10.1.1 76753 1tqnA 486 1.47e+01 1kx5A 135 1.52e+01 a.22.1.1 77593 16vpA 366 1.61e+01 16vpA d.180.1.1 42601 1aba 87 1.64e+01 1aba c.47.1.1 32760 1t6jA 714 1.69e+01 1h3fA 432 1.71e+01 c.26.1.1 76631 d.66.1.4 76632 1n40A 396 1.72e+01 a.104.1.1 79977 1czqA 46 1.81e+01 1czqA h.3.2.1 45720 1nekA 588 1.90e+01 a.7.3.1 80426 c.3.1.4 80427 d.168.1.1 80428 1kyqA 274 1.93e+01 c.2.1.11 73281 e.37.1.1 73282 1odmA 331 1.95e+01 b.82.2.1 86875 1bk0 331 1.96e+01 1bk0 b.82.2.1 28118 1vh5A 148 2.05e+01 1anv 356 2.08e+01 1anv a.54.1.1 17890 g.51.1.1 45365 g.51.1.1 45371 1n46A 258 2.20e+01 a.123.1.1 85315 1oe4A 247 2.24e+01 c.18.1.3 86895 1g3jB 61 2.40e+01 1g3jB j.71.1.1 46366 1dvpA 220 2.42e+01 1dvpA a.118.9.2 19216 g.50.1.1 45358 1dkgB 197 2.44e+01 1dkgA b.73.1.1 27813 h.1.9.1 45627 1k8tA 510 2.47e+01 e.41.1.1 68316 1lvwA 295 2.58e+01 c.68.1.6 84723 1jk0A 419 2.64e+01 a.25.1.2 63142 2sivB 36 2.68e+01 2sivB 1t0tV 248 2.70e+01 6rlxB 28 2.72e+01 g.1.1.1 43988 1t46A 313 2.73e+01 1c14A 262 2.74e+01 1eny c.2.1.2 29927 1uw4B 248 2.77e+01 2bmhA 455 2.81e+01 1bu7A a.104.1.1 18941 1pcfA 66 2.83e+01 1pcfA d.18.1.1 38142 1vp4A 425 2.84e+01 1jvwA 167 3.01e+01 d.26.1.1 71907 1bkjA 240 3.07e+01 1bkjA d.90.1.1 40243 1h6gA 256 3.23e+01 1h6gA a.24.9.1 60669 a.24.9.1 60670 1iw0A 215 3.27e+01 a.132.1.1 83720 1lnqA 336 3.32e+01 c.2.1.9 74049 f.14.1.1 74050 1fjgB 256 3.33e+01 1fjfB c.23.15.1 31400 1nbfA 353 3.33e+01 d.3.1.9 80387 1gkxA 388 3.39e+01 a.29.5.1 65266 d.122.1.4 65267 1w36C 1122 3.39e+01 1hg2A 289 3.40e+01 1hg5A a.118.10.1 61024 1ml4A 308 3.40e+01 c.78.1.1 79255 c.78.1.1 79256 1bu7A 455 3.67e+01 1bu7A a.104.1.1 18937 1fm0E 150 3.76e+01 1fmaE d.41.5.1 38629 1adt 356 3.76e+01 1anv a.54.1.1 17887 g.51.1.1 45362 g.51.1.1 45368 1cjxA 357 3.77e+01 1cjxA d.32.1.3 38516 d.32.1.3 38517 1tpfA 250 3.77e+01 1amk c.1.1.1 28467 1ig8A 486 3.85e+01 2yhx c.55.1.3 64746 c.55.1.3 64747 1fmaE 150 3.86e+01 1fmaE d.41.5.1 38630 1q0pA 223 3.90e+01 1hg5A 289 3.96e+01 1hg5A a.118.10.1 19221 1s7zA 117 3.99e+01