# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1ggzA 148 1.36e-03 a.39.1.5 70176 3cln 148 1.36e-03 1cll a.39.1.5 17286 1top 162 3.47e-03 1ncx a.39.1.5 17223 1ncx 162 3.53e-03 1ncx a.39.1.5 17222 1cll 148 5.00e-03 1cll a.39.1.5 17263 1g4yR 148 5.58e-03 1cll a.39.1.5 60252 1t1dA 100 8.72e-03 1t1dA d.42.1.2 38637 1k4cC 124 1.07e-02 f.14.1.1 68130 1r3jC 124 1.07e-02 1j95A 125 1.09e-02 1bl8A f.14.1.1 62749 1jvmA 125 1.15e-02 f.14.1.1 67351 1jb0A 755 1.57e-02 1jb0A f.29.1.1 62820 1bl8A 97 1.81e-02 1bl8A f.14.1.1 43652 1exrA 148 2.03e-02 1cll a.39.1.5 17299 1avsA 90 2.05e-02 1cll a.39.1.5 17226 2mysB 166 2.31e-02 1wdcB a.39.1.5 17308 1zac 90 3.38e-02 1ncx a.39.1.5 17236 1lnh 857 3.49e-02 1yge a.119.1.1 19237 b.12.1.1 23637 1a68 95 3.89e-02 1t1dA d.42.1.2 38639 1iwgA 1053 3.98e-02 d.58.44.1 76874 d.58.44.1 76875 d.58.44.1 76876 d.58.44.1 76877 d.225.1.1 76878 d.225.1.1 76879 f.35.1.1 76880 f.35.1.1 76881 1osa 148 4.68e-02 1cll a.39.1.5 17300 1m46A 148 6.77e-02 a.39.1.5 78599 1dsxA 87 9.56e-02 1t1dA d.42.1.2 38644 1m45A 148 1.01e-01 a.39.1.5 78598 1kb9C 385 1.49e-01 f.32.1.1 77315 f.21.1.2 77316 1ezvC 385 1.55e-01 1be3C f.32.1.1 75833 f.21.1.2 75834 1j7rA 86 1.76e-01 1j7rA a.39.1.5 62701 1oyeA 1049 1.86e-01 d.58.44.1 87587 d.58.44.1 87588 d.58.44.1 87589 d.58.44.1 87590 d.225.1.1 87591 d.225.1.1 87592 f.35.1.1 87593 f.35.1.1 87594 1ehkA 562 2.13e-01 1ehkA f.24.1.1 43624 1kyoC 385 3.00e-01 f.32.1.1 75904 f.21.1.2 75905 1wdcC 156 3.32e-01 1wdcC a.39.1.5 17317 1byyA 53 3.47e-01 j.12.1.1 46147 1o1fC 147 3.64e-01 i.15.1.1 80997 1nn7A 105 3.92e-01 d.42.1.2 85894 1be3C 379 4.24e-01 1be3C f.32.1.1 75805 f.21.1.2 75806 1ho2A 20 4.38e-01 j.35.1.1 70967 1wdcB 156 6.01e-01 1wdcB a.39.1.5 17302 1o86A 589 7.62e-01 d.92.1.5 81177 1ggwA 140 1.48e+00 1ggwA a.39.1.5 60490 9wgaA 171 1.61e+00 9wgaA g.3.1.1 44000 g.3.1.1 44001 g.3.1.1 44002 g.3.1.1 44003 1qg9A 21 1.68e+00 j.35.1.1 46275 1k9uA 78 1.71e+00 a.39.1.10 84348 1ezfA 340 1.90e+00 1ezfA a.128.1.2 19440 1dceA 567 2.14e+00 1dceA a.118.6.1 19191 b.7.4.1 23218 c.10.2.2 30867 1bf2 750 2.25e+00 1bf2 b.1.18.2 21860 b.71.1.1 27787 c.1.8.1 28774 1wgtA 186 2.38e+00 9wgaA g.3.1.1 44008 g.3.1.1 44009 g.3.1.1 44010 g.3.1.1 44011 1irxA 523 2.86e+00 a.97.1.2 71378 c.26.1.1 71379 1mwvA 714 2.88e+00 a.93.1.3 85161 a.93.1.3 85162 1orsC 132 2.95e+00 f.14.1.1 87353 1jbaA 204 3.06e+00 1rec a.39.1.5 17330 1k94A 165 3.21e+00 a.39.1.8 68333 1aijL 281 3.23e+00 6prcL f.26.1.1 43461 1oahA 519 3.47e+00 a.138.1.3 86736 2scpA 174 3.51e+00 2scpA a.39.1.5 17256 1nr6A 473 3.95e+00 1f4qA 165 4.03e+00 1alvA a.39.1.8 17360 1f5aA 513 4.42e+00 1fa0B a.160.1.1 75835 d.218.1.3 75836 d.58.16.1 39337 1auwA 468 4.62e+00 1auwA a.127.1.1 19416 1q0sA 259 5.23e+00 1n6bA 473 5.63e+00 a.104.1.1 85359 1omrA 201 5.89e+00 1dhx 967 5.89e+00 1dhx b.121.2.2 58971 b.121.2.2 58972 1ctaA 36 5.97e+00 1ctdA a.39.1.5 17232 1jpaA 312 6.11e+00 d.144.1.7 67011 1ddt 535 6.34e+00 1ddt b.2.1.1 22379 d.166.1.1 42241 f.1.2.1 43384 1upkA 341 6.37e+00 1dcnD 436 6.42e+00 1auwA a.127.1.1 19423 1n9dA 199 6.50e+00 a.26.1.1 85464 1dguA 183 7.90e+00 1dguA a.39.1.5 17333 1q9bA 43 8.39e+00 2lbp 346 8.46e+00 2liv c.93.1.1 35709 1el4A 195 8.74e+00 1ej3A a.39.1.5 59453 1ulmA 82 8.82e+00 5pal 109 8.96e+00 1a75A a.39.1.4 17215 1dqeA 137 9.08e+00 1dqeA a.39.2.1 17388 1gntA 553 9.45e+00 e.26.1.1 70290 1nv8A 284 9.50e+00 c.66.1.30 86224 1rec 201 9.53e+00 1rec a.39.1.5 17326 1e2uA 553 9.57e+00 1e1dA e.26.1.1 43362 3kvt 115 9.60e+00 1t1dA d.42.1.2 38642 1hev 43 9.72e+00 1hev g.3.1.1 44060 2liv 344 1.01e+01 2liv c.93.1.1 35708 1pal 108 1.04e+01 1a75A a.39.1.4 17209 1e6fA 143 1.07e+01 1e6fA b.64.1.1 59304 1n93X 375 1.07e+01 1f5sA 211 1.12e+01 1f5sA c.108.1.4 59656 1j97A 211 1.12e+01 1f5sA c.108.1.4 62753 1ponA 36 1.19e+01 1ponA a.39.1.5 17239 1e1dA 553 1.19e+01 1e1dA e.26.1.1 43363 1gp0A 143 1.21e+01 b.64.1.1 70300 1f0lA 535 1.21e+01 1ddt b.2.1.1 22377 d.166.1.1 42239 f.1.2.1 43382 1phnA 162 1.21e+01 1cpcA a.1.1.3 15641 1br1B 150 1.22e+01 1wdcC a.39.1.5 17309 1l7mA 211 1.23e+01 c.108.1.4 73664 1mtyD 512 1.28e+01 1mhyD a.25.1.2 16742 1q41A 424 1.30e+01 1gx5A 536 1.32e+01 e.8.1.4 70682 1qhbA 596 1.35e+01 1qhbA a.111.1.2 19055 1g8iA 190 1.36e+01 1rec a.39.1.5 60363 1rxwA 336 1.38e+01 1i50A 1733 1.38e+01 e.29.1.1 61754 1m1jA 491 1.42e+01 h.1.8.1 74369 1jf2A 195 1.42e+01 1ej3A a.39.1.5 62930 1po5A 476 1.44e+01 1dcnA 424 1.46e+01 1auwA a.127.1.1 19420 6gsvA 217 1.49e+01 1b8xA a.45.1.1 17633 c.47.1.5 32925 1egdA 396 1.49e+01 3mdeA a.29.3.1 16596 e.6.1.1 42857 1jk0A 419 1.50e+01 a.25.1.2 63142 1dt6A 473 1.51e+01 1dt6A a.104.1.1 18977 1dlc 584 1.56e+01 1ciy b.18.1.3 23719 b.77.2.1 27976 f.1.3.1 43391 1auiB 169 1.59e+01 1auiB a.39.1.5 17325 1pvaA 110 1.63e+01 1a75A a.39.1.4 17207 1m48A 133 1.66e+01 a.26.1.2 74443 1jkw 323 1.67e+01 1jkw a.74.1.1 18356 a.74.1.1 18357 2pvbA 107 1.72e+01 1a75A a.39.1.4 17205 2frvB 536 1.74e+01 1h2rL e.18.1.1 43291 1gweA 503 1.76e+01 e.5.1.1 70667 1hy0A 466 1.78e+01 1auwA a.127.1.1 61392 1ctdA 36 1.83e+01 1ctdA a.39.1.5 17230 1gupA 348 1.86e+01 1guqA d.13.1.2 37534 d.13.1.2 37535 1ulkA 126 1.92e+01 1dceB 331 1.94e+01 1dceB a.102.4.3 18872 1gv3A 248 1.97e+01 a.2.11.1 70585 d.44.1.1 70586 1f6fA 199 1.98e+01 1f6fA a.26.1.1 16839 1quvA 578 2.03e+01 1quvA e.8.1.4 43119 1cdp 109 2.06e+01 1a75A a.39.1.4 17197 6prcL 273 2.12e+01 6prcL f.26.1.1 43434 1kn1A 160 2.13e+01 a.1.1.3 77455 1guqA 348 2.20e+01 1guqA d.13.1.2 37522 d.13.1.2 37523 1oohA 126 2.27e+01 1jf0A 195 2.28e+01 1ej3A a.39.1.5 62926 1alvA 173 2.29e+01 1alvA a.39.1.8 17370 1frvB 536 2.31e+01 1h2rL e.18.1.1 43296 1allA 160 2.33e+01 1qgwC a.1.1.3 15647 1drs 59 2.35e+01 3ebx g.7.1.2 44457 1e19A 314 2.41e+01 1b7bA c.73.1.1 34967 1i1iP 681 2.44e+01 1i1iP d.92.1.5 40297 1c2pA 576 2.47e+01 1quvA e.8.1.4 43117 1kfuS 184 2.48e+01 a.39.1.8 68574 1htjF 210 2.48e+01 1htjF a.91.1.1 61254 1mmc 30 2.56e+01 g.3.1.2 44061 1kxu 333 2.61e+01 1jkw a.74.1.1 18358 a.74.1.1 18359 1mmoD 512 2.62e+01 1mhyD a.25.1.2 16770 2lbd 267 2.65e+01 2lbd a.123.1.1 19287 1phnB 172 2.72e+01 1qgwC a.1.1.3 15642 1em2A 229 2.74e+01 1em2A d.129.3.2 41321 1hbzA 498 2.80e+01 1cf9A e.5.1.1 60937 1i0aA 466 2.93e+01 1auwA a.127.1.1 61479 1usgA 346 3.00e+01 2occB 227 3.01e+01 2occB b.6.1.2 23027 f.17.2.1 43519 4lbd 267 3.07e+01 2lbd a.123.1.1 19289 1qcrC 378 3.09e+01 1be3C f.32.1.1 75931 f.21.1.2 75932 1uhnA 189 3.10e+01 1jeyB 565 3.11e+01 1jeqB e.31.1.2 62925 1bi0 226 3.13e+01 1bi0 a.4.5.24 16202 a.76.1.1 18408 b.34.1.2 24453 1b6a 478 3.25e+01 1bn5 a.4.5.25 16223 d.127.1.1 41160 1zncA 266 3.28e+01 2cba b.74.1.1 27955 1dugA 234 3.32e+01 1b8xA a.45.1.1 17718 c.47.1.5 33012 1qv1A 195 3.40e+01 1v54B 227 3.42e+01 1o6dA 163 3.48e+01 1aky 221 3.49e+01 1zin c.37.1.1 31896 g.41.2.1 45197 4cpv 109 3.53e+01 1a75A a.39.1.4 17198 1dxrL 273 3.54e+01 6prcL f.26.1.1 43431 1hcuA 503 3.55e+01 a.102.2.1 65796 1txb 73 3.55e+01 1txb g.7.1.1 44455 1i3cA 149 3.58e+01 c.23.1.1 71112 1k7wA 468 3.65e+01 a.127.1.1 72130 1hwxA 501 3.67e+01 1hwyA c.2.1.7 30250 c.58.1.1 33898 1giqA 413 3.67e+01 d.166.1.1 76224 d.166.1.1 76225 1hwyA 501 3.68e+01 1hwyA c.2.1.7 30262 c.58.1.1 33910 1an7A 136 3.74e+01 1seiA d.140.1.1 41465 1n1cA 217 3.78e+01 a.184.1.1 85254 1bn5 478 3.88e+01 1bn5 a.4.5.25 16224 d.127.1.1 41161 1yge 839 3.90e+01 1yge a.119.1.1 19234 b.12.1.1 23634 1ezvE 185 3.92e+01 1rie b.33.1.1 59548 f.23.12.1 59549 1n4qB 377 3.93e+01 1kvkA 395 3.94e+01 d.14.1.5 73060 d.58.26.3 73061 1f8nA 839 3.96e+01 1yge a.119.1.1 59703 b.12.1.1 59704 1scmB 145 3.96e+01 1wdcB a.39.1.5 17304