# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1tlqA	189	1.23e+00			
1ks9A	291	2.23e+00		a.100.1.7	68857
				c.2.1.6	68858
1ithA	141	2.24e+00	1ithA	a.1.1.2	15623
1vmgA	95	2.92e+00			
1q0gA	117	5.35e+00			
1t56A	216	5.56e+00			
1toaA	313	5.67e+00	1toaA	c.92.2.2	35598
1i37A	260	6.28e+00	1a28A	a.123.1.1	61583
1swxA	209	6.79e+00			
1t7rA	269	7.20e+00			
1g8iA	190	8.19e+00	1rec	a.39.1.5	60363
1p8cA	145	8.57e+00			
1dxrH	258	8.59e+00	6prcH	b.41.1.1	25456
				f.23.10.1	43433
1j4nA	271	1.02e+01		f.19.1.1	71510
1jalA	363	1.03e+01		c.37.1.8	84138
				d.15.10.2	84139
1dt6A	473	1.04e+01	1dt6A	a.104.1.1	18977
1ih7A	903	1.09e+01	1clqA	c.55.3.5	62375
				e.8.1.1	62376
6prcH	258	1.10e+01	6prcH	b.41.1.1	25457
				f.23.10.1	43436
1h7eA	245	1.13e+01		c.68.1.13	60717
1vkeA	133	1.17e+01			
1iomA	377	1.24e+01		a.103.1.1	83698
1jb0A	755	1.25e+01	1jb0A	f.29.1.1	62820
1eia	207	1.33e+01	1eia	a.28.3.1	16951
				a.73.1.1	18331
1fggA	261	1.33e+01	1fggA	c.68.1.7	34576
1kwsA	261	1.33e+01		c.68.1.7	73083
1gkmA	509	1.37e+01		a.127.1.2	70228
1lw3A	657	1.48e+01			
1ll7A	392	1.53e+01		c.1.8.5	78085
				d.26.3.1	78086
1eagA	342	1.57e+01	1eagA	b.50.1.2	26826
1b8fA	509	1.57e+01	1b8fA	a.127.1.2	19434
1dofA	403	1.57e+01	1c3cA	a.127.1.1	19429
2eiaB	206	1.58e+01	1eia	a.28.3.1	16950
				a.73.1.1	18330
1d2kA	392	1.68e+01	1d2kA	c.1.8.5	29008
				d.26.3.1	38442
1tk1A	260	1.77e+01			
1oshA	232	1.81e+01			
1qgrA	876	1.82e+01	1qgrA	a.118.1.1	19119
1n6bA	473	1.89e+01		a.104.1.1	85359
1k0fA	277	1.97e+01		c.92.2.2	71974
1rzhL	281	2.11e+01			
1nzeA	149	2.18e+01			
1rzhM	307	2.25e+01			
1qv9A	283	2.37e+01			
1clqA	903	2.46e+01	1clqA	c.55.3.5	33717
				e.8.1.1	43006
1fqyA	269	2.54e+01	1fqyA	f.19.1.1	43649
1nr6A	473	2.61e+01			
1pl5A	142	2.80e+01			
1etu	394	2.89e+01	1efcA	c.37.1.8	64737
1e9xA	455	3.03e+01	1ea1A	a.104.1.1	18969
1eysH	259	3.08e+01	6prcH	b.41.1.1	25484
				f.23.10.1	43517
1io7A	368	3.24e+01	1f4tA	a.104.1.1	18971
1ovlA	271	3.27e+01		a.123.1.1	87455
1gqeA	365	3.37e+01		e.38.1.1	70351
1pszA	303	3.40e+01	1toaA	c.92.2.2	35600
1dxrM	323	3.54e+01	6prcM	f.26.1.1	43432
1nyhA	166	3.59e+01		h.1.23.1	86403
1jfmA	174	3.60e+01		d.19.1.1	66640
1iakA	199	3.61e+01	1iakA	b.1.1.2	21625
				d.19.1.1	38199
1pt7A	437	3.71e+01			
6prcM	323	3.74e+01	6prcM	f.26.1.1	43435
1yveJ	524	3.81e+01	1qmgA	a.100.1.2	18790
				c.2.1.6	30187
1q7eA	428	3.89e+01