# List of top-scoring protein chains for t2k-100-30-str2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1fqyA 269 1.35e-01 1fqyA f.19.1.1 43649 1j4nA 271 1.85e-01 f.19.1.1 71510 1dxrH 258 2.62e-01 6prcH b.41.1.1 25456 f.23.10.1 43433 6prcH 258 2.89e-01 6prcH b.41.1.1 25457 f.23.10.1 43436 1jalA 363 6.40e-01 c.37.1.8 84138 d.15.10.2 84139 1tlqA 189 7.49e-01 1i37A 260 1.53e+00 1a28A a.123.1.1 61583 1t7rA 269 2.19e+00 1jb0A 755 2.52e+00 1jb0A f.29.1.1 62820 1e2xA 243 2.58e+00 1e2xA a.4.5.6 16113 a.78.1.1 18443 1ayx 492 2.61e+00 1ayx a.102.1.1 18825 1ih7A 903 2.66e+00 1clqA c.55.3.5 62375 e.8.1.1 62376 1oshA 232 2.74e+00 1hw1A 239 3.43e+00 1e2xA a.4.5.6 16111 a.78.1.1 18441 1clqA 903 4.97e+00 1clqA c.55.3.5 33717 e.8.1.1 43006 1aoa 275 5.13e+00 1aoa a.40.1.1 17396 a.40.1.1 17397 1dofA 403 5.37e+00 1c3cA a.127.1.1 19429 1mjgM 729 5.71e+00 e.26.1.3 79204 1nyhA 166 5.82e+00 h.1.23.1 86403 1be3C 379 6.10e+00 1be3C f.32.1.1 75805 f.21.1.2 75806 1a8h 500 6.46e+00 1a8h a.27.1.1 16922 c.26.1.1 31589 1oaoC 729 7.34e+00 e.26.1.3 86746 1pl5A 142 7.56e+00 1oa4A 222 8.27e+00 b.29.1.11 86731 1hz4A 373 8.64e+00 a.118.8.2 65960 2hmx 133 1.01e+01 1hiwA a.61.1.1 18129 1v54A 514 1.06e+01 1vkeA 133 1.07e+01 2occA 514 1.22e+01 2occA f.24.1.1 43518 1dxrM 323 1.29e+01 6prcM f.26.1.1 43432 1omwA 689 1.36e+01 a.91.1.1 87086 b.55.1.1 87087 d.144.1.7 87088 1qlaC 256 1.65e+01 1qlaC f.21.2.1 43722 1gkzA 388 1.68e+01 a.29.5.1 65268 d.122.1.4 65269 1p8cA 145 1.71e+01 1qv9A 283 1.75e+01 1d7mA 101 2.11e+01 1d7mA h.1.10.1 45628 1wer 334 2.23e+01 1wer a.116.1.2 19108 1iomA 377 2.28e+01 a.103.1.1 83698 1fp1D 372 2.35e+01 1fpqA a.4.5.29 59939 c.66.1.12 59940 1ehkA 562 2.37e+01 1ehkA f.24.1.1 43624 1up8A 598 2.37e+01 1xc0A 33 2.42e+01 1jmeA 455 2.70e+01 a.104.1.1 66885 1gkxA 388 2.85e+01 a.29.5.1 65266 d.122.1.4 65267 1gk4C 84 2.87e+01 h.1.20.1 70205 1sqnA 261 2.99e+01 1sr7A 259 2.99e+01 1ifa 158 3.05e+01 1ifa a.26.1.3 16892 1jpzA 473 3.12e+01 a.104.1.1 67069 6prcM 323 3.17e+01 6prcM f.26.1.1 43435 1gk4A 84 3.31e+01 h.1.20.1 70203 1ithA 141 3.35e+01 1ithA a.1.1.2 15623 1ks9A 291 3.39e+01 a.100.1.7 68857 c.2.1.6 68858 1noyA 388 3.48e+01 1clqA c.55.3.5 33713 1jotA 133 3.50e+01 1jotA 1ireB 228 3.54e+01 b.34.4.4 76770 1upvA 257 3.56e+01 1f1oA 431 3.61e+01 1f1oA a.127.1.1 19433 1ugpB 226 3.62e+01 1uynX 308 3.67e+01 1914 232 3.69e+01 1914 d.49.1.1 83028 d.49.1.1 83029 1gk4D 84 3.74e+01 h.1.20.1 70206 1k0fA 277 3.77e+01 c.92.2.2 71974 1edoA 244 3.83e+01 1ybvA c.2.1.2 29896 1riqA 465 3.84e+01 1eysH 259 3.85e+01 6prcH b.41.1.1 25484 f.23.10.1 43517 1a28A 256 3.97e+01 1a28A a.123.1.1 19290