# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tlqA 189 2.19e-01 1fqyA 269 5.16e-01 1fqyA f.19.1.1 43649 1dxrH 258 1.34e+00 6prcH b.41.1.1 25456 f.23.10.1 43433 6prcH 258 1.34e+00 6prcH b.41.1.1 25457 f.23.10.1 43436 1mjgM 729 1.55e+00 e.26.1.3 79204 1oaoC 729 1.58e+00 e.26.1.3 86746 1jb0A 755 2.21e+00 1jb0A f.29.1.1 62820 1ih7A 903 2.60e+00 1clqA c.55.3.5 62375 e.8.1.1 62376 1p8cA 145 2.81e+00 1vkeA 133 2.83e+00 1j4nA 271 2.88e+00 f.19.1.1 71510 1g8iA 190 3.11e+00 1rec a.39.1.5 60363 1jalA 363 3.83e+00 c.37.1.8 84138 d.15.10.2 84139 1t7rA 269 3.98e+00 1ks9A 291 4.05e+00 a.100.1.7 68857 c.2.1.6 68858 1i37A 260 4.21e+00 1a28A a.123.1.1 61583 1rcuA 195 5.32e+00 1ithA 141 5.51e+00 1ithA a.1.1.2 15623 1vd5A 377 6.13e+00 1ru3A 732 6.13e+00 1aoa 275 7.66e+00 1aoa a.40.1.1 17396 a.40.1.1 17397 1dofA 403 8.38e+00 1c3cA a.127.1.1 19429 1t56A 216 8.70e+00 1tk1A 260 8.79e+00 1oshA 232 9.28e+00 1dt6A 473 1.02e+01 1dt6A a.104.1.1 18977 1oa4A 222 1.04e+01 b.29.1.11 86731 1vmgA 95 1.07e+01 4tmkA 213 1.09e+01 5tmpA c.37.1.1 31930 1d2kA 392 1.10e+01 1d2kA c.1.8.5 29008 d.26.3.1 38442 1dl5A 317 1.15e+01 1dl5A c.66.1.7 64720 d.197.1.1 64721 1c8oA 300 1.30e+01 1c8oA e.1.1.1 42677 1q5dA 419 1.42e+01 1iomA 377 1.48e+01 a.103.1.1 83698 1gkmA 509 1.54e+01 a.127.1.2 70228 1omwA 689 1.56e+01 a.91.1.1 87086 b.55.1.1 87087 d.144.1.7 87088 1iqpA 327 1.56e+01 a.80.1.1 62649 c.37.1.20 62650 1kwsA 261 1.56e+01 c.68.1.7 73083 1fggA 261 1.57e+01 1fggA c.68.1.7 34576 1fc6A 388 1.60e+01 1fc6A b.36.1.3 64738 c.14.1.2 64739 1jpzA 473 1.67e+01 a.104.1.1 67069 1gtrA 553 1.72e+01 1gtrA b.53.1.2 26939 c.26.1.1 31578 2sfa 191 1.74e+01 1qq4A b.47.1.1 25815 1f1oA 431 1.79e+01 1f1oA a.127.1.1 19433 1b8fA 509 1.80e+01 1b8fA a.127.1.2 19434 1qtqA 553 1.83e+01 1gtrA b.53.1.2 26940 c.26.1.1 31579 2eboA 74 1.88e+01 2eboA h.3.2.1 45754 1clqA 903 1.99e+01 1clqA c.55.3.5 33717 e.8.1.1 43006 1ll7A 392 2.00e+01 c.1.8.5 78085 d.26.3.1 78086 1uw4B 248 2.07e+01 1nrjA 158 2.12e+01 d.110.4.4 86124 1itzA 675 2.14e+01 c.36.1.6 76798 c.36.1.10 76797 c.48.1.1 76799 1n6bA 473 2.15e+01 a.104.1.1 85359 1e2xA 243 2.20e+01 1e2xA a.4.5.6 16113 a.78.1.1 18443 1xy7A 166 2.24e+01 1v54A 514 2.29e+01 1eagA 342 2.33e+01 1eagA b.50.1.2 26826 1n83A 270 2.36e+01 a.123.1.1 80276 1wer 334 2.39e+01 1wer a.116.1.2 19108 1nyhA 166 2.48e+01 h.1.23.1 86403 1q5nA 454 2.49e+01 1pl5A 142 2.51e+01 1hw1A 239 2.58e+01 1e2xA a.4.5.6 16111 a.78.1.1 18441 1e7rA 321 2.63e+01 1bsvA c.2.1.2 29808 5tmpA 213 2.67e+01 5tmpA c.37.1.1 31931 1eysH 259 2.77e+01 6prcH b.41.1.1 25484 f.23.10.1 43517 1o63A 219 2.90e+01 1gfsA 321 2.96e+01 c.2.1.2 29811 2hgsA 474 2.98e+01 2hgsA c.30.1.4 31722 d.142.1.6 75997 1e6uA 321 3.13e+01 1bsvA c.2.1.2 29805 1m0uA 249 3.18e+01 a.45.1.1 78359 c.47.1.5 78360 1bsvA 321 3.20e+01 1bsvA c.2.1.2 29809 1ummA 172 3.47e+01 1fp1D 372 3.49e+01 1fpqA a.4.5.29 59939 c.66.1.12 59940 1swxA 209 3.51e+01 1dbhA 354 3.58e+01 1awe a.87.1.1 18514 b.55.1.1 26967 1bwsA 321 3.60e+01 1bsvA c.2.1.2 29812 2eiaB 206 3.60e+01 1eia a.28.3.1 16950 a.73.1.1 18330 1w6uA 302 3.84e+01 1s9aA 257 3.86e+01 1oktA 211 3.89e+01 1ghpA 258 3.90e+01 1btl e.3.1.1 60520 1nr6A 473 3.94e+01 1jsqA 582 3.99e+01 i.13.1.1 63270