# List of top-scoring protein chains for t2k-100-30-dssp-ebghstl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1tlqA 189 1.59e-01 1jalA 363 5.42e-01 c.37.1.8 84138 d.15.10.2 84139 1fqyA 269 7.16e-01 1fqyA f.19.1.1 43649 6prcH 258 1.17e+00 6prcH b.41.1.1 25457 f.23.10.1 43436 1dxrH 258 1.21e+00 6prcH b.41.1.1 25456 f.23.10.1 43433 1jb0A 755 1.22e+00 1jb0A f.29.1.1 62820 1dofA 403 1.40e+00 1c3cA a.127.1.1 19429 1t7rA 269 2.07e+00 1i37A 260 2.35e+00 1a28A a.123.1.1 61583 1gkmA 509 2.40e+00 a.127.1.2 70228 1fc6A 388 2.90e+00 1fc6A b.36.1.3 64738 c.14.1.2 64739 1qlaC 256 3.69e+00 1qlaC f.21.2.1 43722 1v54A 514 4.19e+00 1j4nA 271 4.21e+00 f.19.1.1 71510 1b8fA 509 4.41e+00 1b8fA a.127.1.2 19434 1oshA 232 4.70e+00 1dl5A 317 4.76e+00 1dl5A c.66.1.7 64720 d.197.1.1 64721 1ih7A 903 6.25e+00 1clqA c.55.3.5 62375 e.8.1.1 62376 1ks9A 291 6.42e+00 a.100.1.7 68857 c.2.1.6 68858 1ldfA 281 6.54e+00 f.19.1.1 73845 1p8cA 145 8.59e+00 1fx8A 281 9.25e+00 f.19.1.1 43651 1eia 207 9.48e+00 1eia a.28.3.1 16951 a.73.1.1 18331 1fcyA 236 9.68e+00 2lbd a.123.1.1 19282 2lbd 267 9.86e+00 2lbd a.123.1.1 19287 1hw1A 239 1.00e+01 1e2xA a.4.5.6 16111 a.78.1.1 18441 1rzhL 281 1.03e+01 4lbd 267 1.04e+01 2lbd a.123.1.1 19289 1be3C 379 1.04e+01 1be3C f.32.1.1 75805 f.21.1.2 75806 1vkeA 133 1.06e+01 1dxrM 323 1.11e+01 6prcM f.26.1.1 43432 1lw3A 657 1.11e+01 2occA 514 1.13e+01 2occA f.24.1.1 43518 1f1oA 431 1.14e+01 1f1oA a.127.1.1 19433 1rcuA 195 1.14e+01 1oa4A 222 1.16e+01 b.29.1.11 86731 1e2xA 243 1.21e+01 1e2xA a.4.5.6 16113 a.78.1.1 18443 1noyA 388 1.25e+01 1clqA c.55.3.5 33713 1vns 609 1.33e+01 1vns a.111.1.3 19061 1mjgM 729 1.35e+01 e.26.1.3 79204 1ass 159 1.36e+01 1a6dA c.8.5.2 30818 1rzhM 307 1.40e+01 2sfa 191 1.41e+01 1qq4A b.47.1.1 25815 6prcM 323 1.43e+01 6prcM f.26.1.1 43435 1jffA 451 1.44e+01 c.32.1.1 62932 d.79.2.1 62933 1rfzA 168 1.51e+01 1upvA 257 1.53e+01 1vnc 609 1.54e+01 1vns a.111.1.3 19065 1eagA 342 1.55e+01 1eagA b.50.1.2 26826 1d2kA 392 1.61e+01 1d2kA c.1.8.5 29008 d.26.3.1 38442 1m0uA 249 1.66e+01 a.45.1.1 78359 c.47.1.5 78360 2eiaB 206 1.68e+01 1eia a.28.3.1 16950 a.73.1.1 18330 1pdz 434 1.69e+01 4enl c.1.11.1 29215 d.54.1.1 38859 1oaoC 729 1.73e+01 e.26.1.3 86746 1g8iA 190 1.80e+01 1rec a.39.1.5 60363 1vmgA 95 1.81e+01 1bcfA 158 1.86e+01 1bcfA a.25.1.1 16648 1fp1D 372 1.90e+01 1fpqA a.4.5.29 59939 c.66.1.12 59940 1tk1A 260 1.94e+01 1clqA 903 1.95e+01 1clqA c.55.3.5 33717 e.8.1.1 43006 1eysH 259 1.96e+01 6prcH b.41.1.1 25484 f.23.10.1 43517 1dt6A 473 1.97e+01 1dt6A a.104.1.1 18977 2hmx 133 2.03e+01 1hiwA a.61.1.1 18129 1kwsA 261 2.13e+01 c.68.1.7 73083 1asx 159 2.18e+01 1a6dA c.8.5.2 30821 1fggA 261 2.20e+01 1fggA c.68.1.7 34576 1aijL 281 2.25e+01 6prcL f.26.1.1 43461 1pq9A 253 2.30e+01 1v8bA 479 2.40e+01 1rifA 282 2.50e+01 1ghpA 258 2.50e+01 1btl e.3.1.1 60520 4tmkA 213 2.62e+01 5tmpA c.37.1.1 31930 1swxA 209 2.65e+01 1ll7A 392 2.70e+01 c.1.8.5 78085 d.26.3.1 78086 1v7zA 260 2.73e+01 1jpzA 473 2.82e+01 a.104.1.1 67069 1ithA 141 2.89e+01 1ithA a.1.1.2 15623 1a8h 500 3.12e+01 1a8h a.27.1.1 16922 c.26.1.1 31589 1nozA 388 3.14e+01 1clqA c.55.3.5 33715 1nyhA 166 3.32e+01 h.1.23.1 86403 1cqxA 403 3.48e+01 1cqxA a.1.1.2 15635 b.43.4.2 25667 c.25.1.5 31562 1pjcA 361 3.48e+01 1sayA c.2.1.4 30101 c.23.12.2 31361 1sayA 361 3.49e+01 1sayA c.2.1.4 30102 c.23.12.2 31362 1dbhA 354 3.56e+01 1awe a.87.1.1 18514 b.55.1.1 26967 1l58 164 3.56e+01 1l92 d.2.1.3 36635 1pjbA 361 3.57e+01 1sayA c.2.1.4 30103 c.23.12.2 31363 1ukvG 453 3.69e+01 1iomA 377 3.72e+01 a.103.1.1 83698 1ufzA 83 3.75e+01 1w36C 1122 3.76e+01 1gtrA 553 3.90e+01 1gtrA b.53.1.2 26939 c.26.1.1 31578 1pl5A 142 3.96e+01