# List of top-scoring protein chains for t2k-100-30-alpha hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1jb0A 755 1.79e-02 1jb0A f.29.1.1 62820 6prcH 258 1.92e-01 6prcH b.41.1.1 25457 f.23.10.1 43436 1dxrH 258 3.41e-01 6prcH b.41.1.1 25456 f.23.10.1 43433 1i37A 260 1.04e+00 1a28A a.123.1.1 61583 1aoa 275 1.65e+00 1aoa a.40.1.1 17396 a.40.1.1 17397 1d2kA 392 1.78e+00 1d2kA c.1.8.5 29008 d.26.3.1 38442 1fp1D 372 2.63e+00 1fpqA a.4.5.29 59939 c.66.1.12 59940 1clqA 903 3.17e+00 1clqA c.55.3.5 33717 e.8.1.1 43006 1i50B 1224 3.18e+00 e.29.1.2 61755 4lbd 267 3.31e+00 2lbd a.123.1.1 19289 1g8iA 190 3.86e+00 1rec a.39.1.5 60363 1hw1A 239 4.34e+00 1e2xA a.4.5.6 16111 a.78.1.1 18441 1eysH 259 4.51e+00 6prcH b.41.1.1 25484 f.23.10.1 43517 1b8fA 509 4.65e+00 1b8fA a.127.1.2 19434 2lbd 267 5.42e+00 2lbd a.123.1.1 19287 1qgrA 876 5.50e+00 1qgrA a.118.1.1 19119 1fcyA 236 5.90e+00 2lbd a.123.1.1 19282 2occA 514 6.10e+00 2occA f.24.1.1 43518 1dxrM 323 6.75e+00 6prcM f.26.1.1 43432 2aat 396 6.79e+00 1ajsA c.67.1.1 34348 1ks9A 291 7.25e+00 a.100.1.7 68857 c.2.1.6 68858 1ytfD 121 7.67e+00 1ytfD a.32.1.1 16998 b.56.1.1 27011 1fqyA 269 7.82e+00 1fqyA f.19.1.1 43649 1jb0L 154 8.31e+00 1jb0L f.31.1.1 62829 6prcM 323 8.66e+00 6prcM f.26.1.1 43435 1elt 236 9.20e+00 5ptp b.47.1.2 26281 1fpqA 372 1.03e+01 1fpqA a.4.5.29 59947 c.66.1.12 59948 2sfa 191 1.06e+01 1qq4A b.47.1.1 25815 1ithA 141 1.09e+01 1ithA a.1.1.2 15623 1gkmA 509 1.13e+01 a.127.1.2 70228 1dofA 403 1.18e+01 1c3cA a.127.1.1 19429 1e2xA 243 1.29e+01 1e2xA a.4.5.6 16113 a.78.1.1 18443 1dt6A 473 1.45e+01 1dt6A a.104.1.1 18977 1ars 396 1.49e+01 1ajsA c.67.1.1 34287 1dkgB 197 1.50e+01 1dkgA b.73.1.1 27813 h.1.9.1 45627 1qisA 396 1.54e+01 1ajsA c.67.1.1 34284 1gh2A 107 1.55e+01 1erv c.47.1.1 60515 1fkmA 396 1.56e+01 1fkmA a.69.2.1 18315 a.69.2.1 18316 1spa 396 1.57e+01 1ajsA c.67.1.1 34291 1art 396 1.70e+01 1ajsA c.67.1.1 34285 1ireB 228 1.72e+01 b.34.4.4 76770 1qkkA 155 1.85e+01 1dbwA c.23.1.1 31104 1ahxA 396 1.99e+01 1ajsA c.67.1.1 34293 2u1a 88 2.03e+01 2u1a d.58.7.1 39164 1ajqA 209 2.16e+01 1ajqA d.153.1.2 41840 1ibcA 194 2.23e+01 1pauA c.17.1.1 30997 1brd 248 2.24e+01 1c3wA f.13.1.1 43404 1qlaC 256 2.30e+01 1qlaC f.21.2.1 43722 1pnkA 209 2.31e+01 1ajqA d.153.1.2 41839 1mkaA 171 2.43e+01 1mkaA d.38.1.2 38543 1kwsA 261 2.48e+01 c.68.1.7 73083 1eciB 34 2.65e+01 1eciA a.33.1.1 17000 16vpA 366 2.73e+01 16vpA d.180.1.1 42601 1e8oA 85 2.75e+01 1914 d.49.1.1 38773 1fggA 261 2.77e+01 1fggA c.68.1.7 34576 2at9 247 2.78e+01 1c3wA f.13.1.1 43427 1dbhA 354 2.87e+01 1awe a.87.1.1 18514 b.55.1.1 26967 1fftC 204 2.89e+01 1fftC f.25.1.1 43629 1fps 348 3.02e+01 1uby a.128.1.1 19436 1ai7A 209 3.03e+01 1ajqA d.153.1.2 41845 1aijL 281 3.05e+01 6prcL f.26.1.1 43461 1hy7A 173 3.19e+01 d.92.1.11 65957 1l5zA 155 3.33e+01 c.23.1.1 77722 1dl5A 317 3.36e+01 1dl5A c.66.1.7 64720 d.197.1.1 64721 1aoiC 116 3.37e+01 1aoiC a.22.1.1 16440 1b71A 191 3.59e+01 1ryt a.25.1.1 16647 g.41.5.1 45246 1f45B 197 3.70e+01 1f45B a.26.1.1 59642 1e9xA 455 3.72e+01 1ea1A a.104.1.1 18969 1a28A 256 3.76e+01 1a28A a.123.1.1 19290 1gm7A 209 3.77e+01 d.153.1.2 65302 1dbqA 289 3.89e+01 1qpzA c.93.1.1 35666 1j4nA 271 3.92e+01 f.19.1.1 71510 1bhb 71 3.93e+01 1c3wA j.35.1.1 46239 1au1A 166 3.97e+01 1ifa a.26.1.3 16889