# List of top-scoring protein chains for t2k-100-30-CB_burial_14_7 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 6prcH 258 1.22e+00 6prcH b.41.1.1 25457 f.23.10.1 43436 1otjA 283 1.51e+00 1gy9A 283 1.52e+00 b.82.2.5 70742 1dxrH 258 1.68e+00 6prcH b.41.1.1 25456 f.23.10.1 43433 1gqwA 283 2.26e+00 b.82.2.5 70377 1b3rA 431 3.01e+00 1b3rA c.2.1.4 30106 c.23.12.3 31366 1mixA 206 3.96e+00 a.11.2.1 79166 b.55.1.5 79167 1tlqA 189 4.08e+00 1d4fA 431 4.09e+00 1b3rA c.2.1.4 30110 c.23.12.3 31370 1a7aA 432 4.11e+00 1b3rA c.2.1.4 30104 c.23.12.3 31364 1gj7B 253 4.59e+00 1vjgA 218 4.90e+00 1uynX 308 5.71e+00 1lzlA 323 5.88e+00 c.69.1.2 78306 1s72M 194 5.93e+00 1li4A 432 6.55e+00 c.2.1.4 84616 c.23.12.3 84617 1c5yB 253 8.30e+00 5ptp 1eqnA 321 8.42e+00 1dd9A e.13.1.1 43256 1a99A 344 8.81e+00 1pot c.94.1.1 35812 1pjhA 280 1.02e+01 1gdgA 293 1.07e+01 1dhy 292 1.07e+01 1han d.32.1.3 38504 d.32.1.3 38505 1p0hA 318 1.11e+01 1gk8I 140 1.26e+01 d.73.1.1 65242 1g55A 343 1.28e+01 1g55A c.66.1.26 34247 1b6g 310 1.42e+01 1b6g c.69.1.8 34661 1suwA 249 1.46e+01 1dd9A 338 1.54e+01 1dd9A e.13.1.1 43254 1kgyA 181 1.54e+01 b.18.1.4 72449 1nnsA 326 1.66e+01 c.88.1.1 85910 1js1X 324 1.68e+01 c.78.1.1 71834 c.78.1.1 71835 1jjiA 311 1.74e+01 c.69.1.2 66766 1kw3B 292 1.74e+01 d.32.1.3 77549 d.32.1.3 77550 1shwB 181 1.90e+01 1vjhA 122 1.99e+01 1ir21 140 2.04e+01 3pga1 337 2.05e+01 4pgaA 1t0yA 122 2.07e+01 1li5A 461 2.13e+01 a.27.1.1 73912 c.26.1.1 73913 1ddwA 120 2.14e+01 1evhA b.55.1.4 27001 1ev0A 58 2.30e+01 1ev0A d.71.1.1 39594 1ede 310 2.42e+01 1b6g c.69.1.8 34662 1b71A 191 2.65e+01 1ryt a.25.1.1 16647 g.41.5.1 45246 1jnrB 150 2.83e+01 d.58.1.5 66969 1k9dA 679 2.97e+01 c.1.8.10 77292 d.92.2.2 77293 1w9pA 433 3.15e+01 1l6rA 227 3.18e+01 c.108.1.10 77768 1ryt 190 3.19e+01 1ryt a.25.1.1 16646 g.41.5.1 45245 1dvbA 191 3.22e+01 1ryt a.25.1.1 16645 g.41.5.1 45244 1j1bA 420 3.22e+01 1jmeA 455 3.28e+01 a.104.1.1 66885 1b8qA 127 3.36e+01 1qauA b.36.1.1 24781 1ddeA 338 3.37e+01 1dd9A e.13.1.1 43255 1d7qA 143 3.43e+01 1d7qA b.40.4.5 25331 1pwhA 327 3.46e+01 1hn6A 110 3.46e+01 g.61.1.1 76721 1ddvA 111 3.54e+01 1evhA b.55.1.4 27002 1mzjA 339 3.55e+01 c.95.1.1 79700 c.95.1.1 79701 1g8jA 825 3.58e+01 1g8jA b.52.2.2 26924 c.81.1.1 35332 1eysH 259 3.61e+01 6prcH b.41.1.1 25484 f.23.10.1 43517 1lkoA 191 3.67e+01 a.25.1.1 78063 g.41.5.1 78064 1is2A 661 3.69e+01 a.29.3.2 71382 a.29.3.2 71383 e.6.1.2 71384 1j6nA 303 3.71e+01 c.79.1.1 71594 1o58A 303 3.74e+01 1j0aA 325 3.78e+01 c.79.1.1 83871 1n8yC 608 3.78e+01 c.10.2.5 80314 c.10.2.5 80315 g.3.9.1 80316 g.3.9.1 80317 1dbqA 289 3.99e+01 1qpzA c.93.1.1 35666