a2m2html output for file tmp.a2m

Citations (SAM, SAM-T99, HMMs)

R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting remote protein homologies, Bioinformatics 14(10):846-856, 1998.
A. Krogh et al., Hidden Markov models in computational biology: Applications to protein modeling, JMB 235:1501-1531, Feb 1994.

Sequence numbers correspond to the following labels:

- YGR212W YGR212W SGDID:S0003444, Chr VII from 917035-918441
- gi|6321651|ref|NP_011728.1|_1:468 Hypothetical ORF; Ygr212wp [Saccharomyces cerevisiae]
- gi|1723739 sp|P53304|YG4K_YEAST HYPOTHETICAL 54.5 KD PROTEIN IN ZPR1-RTA1 INTERGENIC REGION
- gi|2131700|pir||S64535 hypothetical protein YGR212w - yeast (Saccharomyces cerevisiae)
- gi|1323381|emb|CAA97239.1| ORF YGR212w [Saccharomyces cerevisiae]

              10        20        30        40        50        60     
              |         |         |         |         |         |     
   1 MNLKLSAIESYFFHRSRLNLHSCFYVGIKLNELPKKSQLIAALKYTVIQHERLTCNVFYDELKKE
   2 MNLKLSAIESYFFHRSRLNLHSCFYVGIKLNELPKKSQLIAALKYTVIQHERLTCNVFYDELKKE


         70        80        90       100       110       120       130
         |         |         |         |         |         |         |
   1 NFLQNILEPLKFCDLVEYRHDWDQLGETEINHIFQRYNFSYNENKPLWKILILPNQNQMLLLTDH
   2 NFLQNILEPLKFCDLVEYRHDWDQLGETEINHIFQRYNFSYNENKPLWKILILPNQNQMLLLTDH


             140       150       160       170       180       190     
              |         |         |         |         |         |     
   1 VLMDGMSAIHVWETFMEGLQMQQPVEIDETIYSPSLNSSTEKIMSAPLYGDWPIPWNWHIVRQLV
   2 VLMDGMSAIHVWETFMEGLQMQQPVEIDETIYSPSLNSSTEKIMSAPLYGDWPIPWNWHIVRQLV


        200       210       220       230       240       250       260
         |         |         |         |         |         |         |
   1 SRLHYWFPQTVVKNNRNLIQFANYSFPKDLLDDKPSDGTQKYKVKNTNHQWEFRLSPTHLNDILQ
   2 SRLHYWFPQTVVKNNRNLIQFANYSFPKDLLDDKPSDGTQKYKVKNTNHQWEFRLSPTHLNDILQ


             270       280       290       300       310       320     
              |         |         |         |         |         |     
   1 ECKANNTSLTSLLGALVCTSFEKIAAHEYTGSFLKIELPMNIRKPFERVLKLPSDDKLAVGNFIA
   2 ECKANNTSLTSLLGALVCTSFEKIAAHEYTGSFLKIELPMNIRKPFERVLKLPSDDKLAVGNFIA


        330       340       350       360       370       380       390
         |         |         |         |         |         |         |
   1 VIEFNHKLHQNRGIWDIASQIQRAIRSSSEDKIIDKVNEVKLLEVISSQQYIEDKISLNNGPSST
   2 VIEFNHKLHQNRGIWDIASQIQRAIRSSSEDKIIDKVNEVKLLEVISSQQYIEDKISLNNGPSST


             400       410       420       430       440       450     
              |         |         |         |         |         |     
   1 FEVTNLGFQTFKDACNTSLPFYIVDATFNEPQGISSIFSLSVISTPGNGLHCCISYPNTLTKVLE
   2 FEVTNLGFQTFKDACNTSLPFYIVDATFNEPQGISSIFSLSVISTPGNGLHCCISYPNTLTKVLE


        460        
         |        
   1 PHWQYMKDYLNLY
   2 PHWQYMKDYLNLY