# List of top-scoring protein chains for t2k-w0.5 hidden Markov model.
# HMM and HMM E-value scores computed by  SAM (c) 1992-2001 Regents of the University of California, Santa Cruz
# Sequence Alignment and Modeling Software System
#     http://www.cse.ucsc.edu/research/compbio/sam.html
# ----------------- Citations (SAM, SAM-T99, HMMs) --------------------
# R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
#  Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
# K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
#  remote protein homologies, Bioinformatics 14(10):846-856, 1998.
# A. Krogh et al., Hidden Markov models in computational biology:
#  Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
#
# FSSP representative for each protein chain taken from FSSP:
# ------------------Citations (FSSP) -----------------------------------
# L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602.
# 
#SCOP domains found in each protein chain taken from SCOP:
# ------------------Citations (SCOP) -----------------------------------
#Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995).
#SCOP: a structural classification of proteins database for the investigation of sequences and structures.
#J. Mol. Biol. 247, 536-540.
Sequence_ID	Length	Target_Evalue	FSSP-rep	SCOP_domain	SCOP_suid
5S	5N	12S	6S	12S	10N
1bmlC	362	1.24e+00	1bmlC	d.15.5.1	37729
				d.15.5.1	37730
				d.15.5.1	37731
1fvrA	327	4.26e+00		d.144.1.2	60047
1fgyA	127	7.72e+00	1faoA	b.55.1.1	26976
1m54A	363	1.03e+01		c.79.1.1	74463
1lshB	319	1.16e+01		f.7.1.1	74245
1j3iA	280	1.37e+01			
8pchA	220	1.42e+01	1cs8A		
1j3jA	280	1.42e+01			
1jbqA	435	1.42e+01	1oasA	c.79.1.1	62850
1jk0B	345	1.45e+01		a.25.1.2	63143
1mr7A	209	1.54e+01			
1iznA	286	1.60e+01			
1j3kA	280	1.86e+01			
1fiqA	219	2.01e+01	1qj2A	a.56.1.1	17912
				d.15.4.2	37697
1fhwA	129	2.26e+01	1faoA	b.55.1.1	26977
1ntx	60	2.80e+01	3ebx	g.7.1.1	44453
1ldjB	90	3.00e+01		g.44.1.1	73850
1azzA	226	3.13e+01	5ptp	b.47.1.2	26072
1eaxA	241	3.37e+01		b.47.1.2	64889
1d6vL	211	3.73e+01	8fabA	b.1.1.1	20196
				b.1.1.2	21212
1jb4A	127	3.83e+01		d.17.4.2	71626
1jb2A	127	3.87e+01		d.17.4.2	71624
1kvzA	107	3.91e+01		d.5.1.1	73068
1ipaA	274	3.95e+01		c.116.1.1	71254
				d.79.3.3	71255
1pme	380	3.98e+01	1hcl	d.144.1.1	41653
1jb5A	127	3.98e+01		d.17.4.2	71628