# List of top-scoring protein chains for t2k-100-30-stride-ebghtl hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1l5aA 436 4.74e-02 c.43.1.2 75923 c.43.1.2 75924 8pchA 220 3.39e-01 1cs8A 1lnsA 763 5.56e-01 a.40.2.1 78101 b.18.1.13 78102 c.69.1.21 78103 1i19A 561 8.98e-01 1i19A d.58.32.3 61522 d.145.1.1 61523 2minB 522 1.37e+00 1qguB c.92.2.3 35610 1mkiA 330 1.64e+00 1keiA 316 1.67e+00 d.92.1.2 77349 2tmnE 316 1.73e+00 1hyt d.92.1.2 59055 1hyt 316 1.79e+00 1hyt d.92.1.2 59005 8tlnE 316 1.79e+00 1hyt d.92.1.2 59075 6tmnE 316 1.81e+00 1hyt d.92.1.2 59071 1m1nB 522 2.07e+00 c.92.2.3 78418 1bgp 309 2.39e+00 1bgp a.93.1.1 18690 1h2aL 567 2.67e+00 1h2rL e.18.1.1 43299 1azo 232 2.81e+00 1azo c.52.1.14 33329 1el6A 219 3.36e+00 1el6B d.182.1.1 42606 1el6B 219 3.60e+00 1el6B d.182.1.1 42607 1cxqA 162 3.89e+00 1cxqA c.55.3.2 33621 3minB 522 5.24e+00 1qguB c.92.2.3 35606 1amj 754 5.41e+00 1amj c.8.2.1 30725 c.83.1.1 35401 8acn 754 5.49e+00 1amj c.8.2.1 30724 c.83.1.1 35400 1ubkL 534 6.25e+00 1vsd 152 6.48e+00 1cxqA c.55.3.2 33625 2kinA 238 6.66e+00 1bg2 c.37.1.9 32190 1jvpP 298 6.70e+00 d.144.1.1 67371 1gsoA 431 6.75e+00 1gsoA b.84.2.1 28240 c.30.1.1 31647 d.142.1.2 41492 1asu 162 7.58e+00 1cxqA c.55.3.2 33626 1f5mA 180 7.59e+00 1f5mB d.110.2.1 40895 1h2rL 534 7.81e+00 1h2rL e.18.1.1 43298 1gtkA 313 8.09e+00 c.94.1.1 76346 d.50.2.1 76347 1pda 315 8.13e+00 1pda c.94.1.1 35751 d.50.2.1 38794 1g4uS 383 8.52e+00 1g4uS a.24.11.1 16643 c.45.1.2 32691 1f5mB 180 8.70e+00 1f5mB d.110.2.1 40896 1b0jA 754 9.62e+00 1amj c.8.2.1 30719 c.83.1.1 35395 1g4wR 383 9.91e+00 1g4uS a.24.11.1 16644 c.45.1.2 32692 1gqeA 365 9.96e+00 e.38.1.1 70351 1k6xA 352 1.05e+01 c.2.1.2 68238 1fljA 260 1.10e+01 2cba b.74.1.1 27954 1k6iA 352 1.12e+01 c.2.1.2 68223 1e3dB 542 1.14e+01 1h2rL e.18.1.1 59189 7acn 754 1.15e+01 1amj c.8.2.1 30717 c.83.1.1 35393 1hcl 298 1.31e+01 1hcl d.144.1.1 41593 1c96A 753 1.35e+01 1amj c.8.2.1 30727 c.83.1.1 35403 1uc8A 280 1.40e+01 1oe4A 247 1.41e+01 1gz8A 299 1.56e+01 1icxA 155 1.62e+01 d.129.3.1 71191 1g8fA 511 1.78e+01 1g8fA b.58.1.2 60348 c.26.1.5 60349 c.37.1.15 60350 1cby 259 1.81e+01 1cby d.103.1.1 40705 1a3c 181 1.97e+01 1a3c c.61.1.1 34095 6acn 754 2.05e+01 1amj c.8.2.1 30721 c.83.1.1 35397 1qo7A 394 2.08e+01 1qo7A c.69.1.11 34697 1kf6B 243 2.10e+01 a.1.2.1 72397 d.15.4.2 72398 1gskA 513 2.18e+01 1qcsA 211 2.38e+01 1qcsA b.52.2.3 26927 d.31.1.1 38461 1bg2 325 2.41e+01 1bg2 c.37.1.9 32189 1ni4B 341 2.44e+01 1e1xA 299 2.46e+01 1hcl d.144.1.1 59157 1f8rA 498 2.52e+01 1f8rA c.3.1.2 30410 d.16.1.5 37974 1a15A 67 2.52e+01 1a15A d.9.1.1 37451 1nf3C 128 2.54e+01 1f1sA 814 2.56e+01 a.102.3.2 64928 b.1.18.2 64929 b.24.1.1 64930 b.30.5.2 64931 1cx4A 305 2.65e+01 b.82.3.2 59099 b.82.3.2 59100 1go2A 304 2.68e+01 b.43.4.2 76243 c.25.1.1 76244 3ldh 330 2.74e+01 3ldh i.12.1.1 46015 1bk1 184 2.85e+01 1axkA b.29.1.11 24340 1ipaA 274 2.89e+01 c.116.1.1 71254 d.79.3.3 71255 1eysH 259 2.97e+01 6prcH b.41.1.1 25484 f.23.10.1 43517 1h3gA 601 3.02e+01 1dq3A 454 3.08e+01 1dq3A b.86.1.2 28380 d.50.3.1 38798 d.95.2.2 40585 d.95.2.2 40586 1e2kA 331 3.35e+01 1qhiA c.37.1.1 31854 1brt 277 3.41e+01 1brt c.69.1.12 34699 1kxoA 184 3.45e+01 1jkgA 140 3.62e+01 d.17.4.2 66795 1aol 228 3.74e+01 1aol b.20.1.1 23840 1lbvA 252 3.88e+01 e.7.1.1 73813 2ki5A 366 3.90e+01 1qhiA c.37.1.1 31862 1smd 496 3.96e+01 1smd b.71.1.1 27768 c.1.8.1 28755