# List of top-scoring protein chains for t2k-100-30-str2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1l5aA 436 4.89e-02 c.43.1.2 75923 c.43.1.2 75924 8acn 754 1.34e+00 1amj c.8.2.1 30724 c.83.1.1 35400 1amj 754 1.34e+00 1amj c.8.2.1 30725 c.83.1.1 35401 1c96A 753 1.83e+00 1amj c.8.2.1 30727 c.83.1.1 35403 1bgp 309 1.93e+00 1bgp a.93.1.1 18690 1b0jA 754 1.96e+00 1amj c.8.2.1 30719 c.83.1.1 35395 7acn 754 1.98e+00 1amj c.8.2.1 30717 c.83.1.1 35393 6acn 754 2.00e+00 1amj c.8.2.1 30721 c.83.1.1 35397 1jkgA 140 2.08e+00 d.17.4.2 66795 1a15A 67 2.49e+00 1a15A d.9.1.1 37451 1icxA 155 2.73e+00 d.129.3.1 71191 1gk8A 475 2.86e+00 c.1.14.1 65234 d.58.9.1 65235 1jn5A 140 3.24e+00 d.17.4.2 66921 1keiA 316 3.28e+00 d.92.1.2 77349 1i19A 561 3.75e+00 1i19A d.58.32.3 61522 d.145.1.1 61523 6tmnE 316 4.12e+00 1hyt d.92.1.2 59071 2tmnE 316 4.15e+00 1hyt d.92.1.2 59055 8tlnE 316 4.15e+00 1hyt d.92.1.2 59075 1hyt 316 4.16e+00 1hyt d.92.1.2 59005 1bk1 184 4.18e+00 1axkA b.29.1.11 24340 1lnsA 763 4.32e+00 a.40.2.1 78101 b.18.1.13 78102 c.69.1.21 78103 1n99A 166 5.04e+00 1jvpP 298 5.14e+00 d.144.1.1 67371 1h2aL 567 5.26e+00 1h2rL e.18.1.1 43299 1qg7A 67 5.37e+00 1a15A d.9.1.1 37449 8pchA 220 5.40e+00 1cs8A 1f1sA 814 5.81e+00 a.102.3.2 64928 b.1.18.2 64929 b.24.1.1 64930 b.30.5.2 64931 1dmuA 299 6.78e+00 1dmuA c.52.1.4 33294 1f5mB 180 6.81e+00 1f5mB d.110.2.1 40896 1f5mA 180 6.82e+00 1f5mB d.110.2.1 40895 1hcl 298 7.05e+00 1hcl d.144.1.1 41593 1mwxA 646 7.13e+00 d.17.4.5 79610 d.175.1.1 79611 e.3.1.1 79612 1gz8A 299 8.30e+00 1mwsA 646 8.33e+00 d.17.4.5 79592 d.175.1.1 79593 e.3.1.1 79594 1e1xA 299 8.52e+00 1hcl d.144.1.1 59157 1eaxA 241 9.51e+00 b.47.1.2 64889 1cx4A 305 9.79e+00 b.82.3.2 59099 b.82.3.2 59100 1uc8A 280 1.39e+01 1mkiA 330 1.40e+01 1ubkL 534 1.53e+01 1o0iA 138 1.59e+01 1cxqA 162 1.75e+01 1cxqA c.55.3.2 33621 1h3gA 601 1.81e+01 1qusA 322 1.89e+01 1ltm d.2.1.6 36991 1vsd 152 1.90e+01 1cxqA c.55.3.2 33625 1mu5A 471 1.91e+01 a.156.1.3 79472 d.14.1.3 79473 d.122.1.2 79474 1oe4A 247 1.93e+01 1dkxA 219 1.98e+01 1dkzA e.20.1.1 43315 1gtkA 313 2.01e+01 c.94.1.1 76346 d.50.2.1 76347 1f4qA 165 2.05e+01 1alvA a.39.1.8 17360 1e2wA 251 2.07e+01 1hcz b.2.6.1 22466 b.84.2.2 28252 1h2rL 534 2.07e+01 1h2rL e.18.1.1 43298 1mwrA 646 2.08e+01 d.17.4.5 79586 d.175.1.1 79587 e.3.1.1 79588 1ltm 320 2.10e+01 1ltm d.2.1.6 36992 1asu 162 2.12e+01 1cxqA c.55.3.2 33626 1bn5 478 2.19e+01 1bn5 a.4.5.25 16224 d.127.1.1 41161 1el6A 219 2.20e+01 1el6B d.182.1.1 42606 1b6a 478 2.22e+01 1bn5 a.4.5.25 16223 d.127.1.1 41160 1k94A 165 2.24e+01 a.39.1.8 68333 1nf3C 128 2.26e+01 1hcz 252 2.31e+01 1hcz b.2.6.1 22464 b.84.2.2 28250 1qgvA 142 2.31e+01 1qgvA c.47.1.8 33056 1azo 232 2.34e+01 1azo c.52.1.14 33329 1bpr 191 2.34e+01 1dkzA e.20.1.1 43319 1bowA 159 2.38e+01 1bowA d.60.1.1 39528 1joa 447 2.39e+01 1nhp c.3.1.5 30563 c.3.1.5 30564 d.87.1.1 40203 1el6B 219 2.43e+01 1el6B d.182.1.1 42607 1jqpA 438 2.43e+01 b.61.5.1 77162 d.3.1.1 77163 1nhs 447 2.44e+01 1nhp c.3.1.5 30555 c.3.1.5 30556 d.87.1.1 40199 1a6wL 109 2.45e+01 1mfa b.1.1.1 20252 1nhp 447 2.54e+01 1nhp c.3.1.5 30549 c.3.1.5 30550 d.87.1.1 40196 1bxnA 485 2.55e+01 1burA c.1.14.1 29376 d.58.9.1 39282 1j6wA 175 2.58e+01 1j98A d.185.1.2 62663 1lbvA 252 2.65e+01 e.7.1.1 73813 1parA 53 2.69e+01 1bazA a.43.1.1 17437 1fm4A 159 2.74e+01 1bv1 d.129.3.1 76186 1ku8A 133 2.80e+01 2dri 271 2.89e+01 2dri c.93.1.1 35637 1ayyA 151 2.91e+01 1apyA d.153.1.5 42016 1a6uL 108 2.93e+01 1mfa b.1.1.1 20254 1gqeA 365 3.02e+01 e.38.1.1 70351 1g7tA 594 3.05e+01 1g7rA b.43.3.1 25714 b.43.3.1 25715 c.20.1.1 31033 c.37.1.8 32148 1mykA 53 3.07e+01 1bazA a.43.1.1 17425 1a6vL 110 3.08e+01 1mfa b.1.1.1 20256 1jacA 133 3.10e+01 1jotA 1m26A 133 3.11e+01 1smd 496 3.13e+01 1smd b.71.1.1 27768 c.1.8.1 28755 1dim 381 3.16e+01 3sil b.68.1.1 27544 1bdtA 53 3.20e+01 1bazA a.43.1.1 17433 1ge8A 249 3.21e+01 1plq d.131.1.2 41398 d.131.1.2 41399 1erjA 393 3.22e+01 1erjA b.69.4.1 27660 1f60A 458 3.29e+01 1efcA b.43.3.1 25705 b.44.1.1 25745 c.37.1.8 32140 1g7rA 594 3.31e+01 1g7rA b.43.3.1 25716 b.43.3.1 25717 c.20.1.1 31034 c.37.1.8 32149 1bf8 205 3.36e+01 1qpxA b.1.11.1 22332 b.7.2.1 23214 2fnbA 95 3.36e+01 2fnbA b.1.2.1 21979 1o7fA 469 3.37e+01 a.4.5.31 81131 b.82.3.2 81132 b.82.3.2 81133 1jhnA 424 3.42e+01 b.29.1.12 70060 b.104.1.1 66722 1cq3A 233 3.50e+01 1cq3A b.27.1.1 23923 1pda 315 3.52e+01 1pda c.94.1.1 35751 d.50.2.1 38794 1e3dB 542 3.54e+01 1h2rL e.18.1.1 59189 3sil 379 3.60e+01 3sil b.68.1.1 27542 1fxlA 167 3.61e+01 1b7fA d.58.7.1 39183 d.58.7.1 39184 1fzvA 132 3.73e+01 1vpfA g.17.1.1 60159 1f8rA 498 3.79e+01 1f8rA c.3.1.2 30410 d.16.1.5 37974 1dkzA 219 3.82e+01 1dkzA e.20.1.1 43314 1a6q 382 3.84e+01 1a6q a.159.1.1 75801 d.219.1.1 75802 1mo9A 523 3.84e+01 c.3.1.5 79341 c.3.1.5 79342 d.87.1.1 79343 1m1nB 522 3.90e+01 c.92.2.3 78418 1ffyA 917 3.95e+01 1qu2A a.27.1.1 16926 b.51.1.1 26891 c.26.1.1 31593 1qu2A 917 3.95e+01 1qu2A a.27.1.1 16925 b.51.1.1 26890 c.26.1.1 31592