# List of top-scoring protein chains for t2k-100-30-str hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1l5aA 436 2.41e-01 1i19A 561 1.48e+00 1i19A d.58.32.3 61522 d.145.1.1 61523 1a15A 67 1.60e+00 1a15A d.9.1.1 37451 1azo 232 1.65e+00 1azo c.52.1.14 33329 1h2aL 567 3.26e+00 1h2rL e.18.1.1 43299 1qg7A 67 3.26e+00 1a15A d.9.1.1 37449 1dmuA 299 3.34e+00 1dmuA c.52.1.4 33294 1bgp 309 4.60e+00 1bgp a.93.1.1 18690 6tmnE 316 5.11e+00 1hyt d.92.1.2 59071 2tmnE 316 5.14e+00 1hyt d.92.1.2 59055 1hyt 316 5.15e+00 1hyt d.92.1.2 59005 8tlnE 316 5.16e+00 1hyt d.92.1.2 59075 8acn 754 5.30e+00 1amj c.8.2.1 30724 c.83.1.1 35400 8pchA 220 5.30e+00 1cs8A d.3.1.1 37084 1amj 754 5.34e+00 1amj c.8.2.1 30725 c.83.1.1 35401 1e3dB 542 5.34e+00 1h2rL e.18.1.1 59189 1el6B 219 6.11e+00 1el6B d.182.1.1 42607 1el6A 219 6.39e+00 1el6B d.182.1.1 42606 1bk1 184 6.61e+00 1axkA b.29.1.11 24340 1qusA 322 7.22e+00 1ltm d.2.1.6 36991 1ltm 320 7.51e+00 1ltm d.2.1.6 36992 1b0jA 754 7.82e+00 1amj c.8.2.1 30719 c.83.1.1 35395 1c96A 753 9.21e+00 1amj c.8.2.1 30727 c.83.1.1 35403 6acn 754 1.00e+01 1amj c.8.2.1 30721 c.83.1.1 35397 7acn 754 1.05e+01 1amj c.8.2.1 30717 c.83.1.1 35393 1icxA 155 1.06e+01 1ipaA 274 1.16e+01 1fa0B 537 1.19e+01 1fa0B d.58.16.1 39336 e.9.1.2 43230 1gk8A 475 1.21e+01 c.1.14.1 65234 d.58.9.1 65235 1parA 53 1.23e+01 1bazA a.43.1.1 17437 1gsoA 431 1.26e+01 1gsoA b.84.2.1 28240 c.30.1.1 31647 d.142.1.2 41492 1f1sA 814 1.29e+01 a.102.3.2 64928 b.1.1.5 64929 b.24.1.1 64930 b.30.3.1 64931 1dryA 324 1.37e+01 1drtA b.82.2.2 28128 1bdtA 53 1.45e+01 1bazA a.43.1.1 17433 1ds1A 324 1.47e+01 1drtA b.82.2.2 28127 1eaxA 241 1.68e+01 b.47.1.2 64889 1mykA 53 1.69e+01 1bazA a.43.1.1 17425 1cv2A 296 1.70e+01 1bn6A c.69.1.8 34680 1drtA 324 1.77e+01 1drtA b.82.2.2 28130 1fzyA 149 1.85e+01 d.20.1.1 65072 1dkxA 219 1.92e+01 1dkzA e.20.1.1 43315 1f5mB 180 1.97e+01 1f5mB d.110.2.1 40896 1f5mA 180 2.00e+01 1f5mB d.110.2.1 40895 1jhnA 424 2.00e+01 b.29.1.12 66720 b.29.1.12 66721 b.104.1.1 66722 1cxqA 162 2.05e+01 1cxqA c.55.3.2 33621 1ayx 492 2.20e+01 1ayx a.102.1.1 18825 2fnbA 95 2.21e+01 2fnbA b.1.2.1 21979 1ffyA 917 2.31e+01 1qu2A a.27.1.1 16926 b.51.1.1 26891 c.26.1.1 31593 1qu2A 917 2.31e+01 1qu2A a.27.1.1 16925 b.51.1.1 26890 c.26.1.1 31592 1vsd 152 2.32e+01 1cxqA c.55.3.2 33625 1bazA 53 2.36e+01 1bazA a.43.1.1 17421 1poc 134 2.39e+01 1poc a.133.1.1 19513 1h2rL 534 2.41e+01 1h2rL e.18.1.1 43298 1yer 228 2.41e+01 1yer d.122.1.1 41101 1jkgA 140 2.43e+01 d.17.4.2 66795 1asu 162 2.43e+01 1cxqA c.55.3.2 33626 1qh0A 295 2.56e+01 b.43.4.2 68891 c.25.1.1 68892 1go2A 304 2.61e+01 1a3c 181 2.63e+01 1a3c c.61.1.1 34095 1a6wL 109 2.70e+01 1mfa b.1.1.1 20252 1prxA 224 2.78e+01 1prxA c.47.1.10 33076 1dkzA 219 2.79e+01 1dkzA e.20.1.1 43314 1b2rA 304 2.82e+01 1fnc b.43.4.2 25648 c.25.1.1 31538 1a6uL 108 2.89e+01 1mfa b.1.1.1 20254 1k94A 165 2.93e+01 a.39.1.7 68333 1m22A 503 2.94e+01 1wwbX 103 2.97e+01 1wwcA b.1.1.4 21777 1que 303 2.98e+01 1fnc b.43.4.2 25647 c.25.1.1 31537 1bpr 191 2.99e+01 1dkzA e.20.1.1 43319 1aol 228 3.03e+01 1aol b.20.1.1 23840 1fa0A 537 3.04e+01 1fa0B d.58.16.1 39335 e.9.1.2 43229 1jvpP 298 3.06e+01 d.144.1.1 67371 1f4qA 165 3.14e+01 1alvA a.39.1.7 17360 1h3nA 878 3.15e+01 1fv0A 121 3.42e+01 1kpmA 121 3.52e+01 1hcl 298 3.57e+01 1hcl d.144.1.1 41593 1jn5A 140 3.59e+01 d.17.4.2 66921 4xiaA 393 3.68e+01 4xis c.1.15.3 29439 7icd 416 3.91e+01 1iso c.77.1.1 35072