# List of top-scoring protein chains for t2k-100-30-dssp-ehl2 hidden Markov model. # HMM and HMM E-value scores computed by SAM (c) 1992-2001 Regents of the University of California, Santa Cruz # Sequence Alignment and Modeling Software System # http://www.cse.ucsc.edu/research/compbio/sam.html # ----------------- Citations (SAM, SAM-T99, HMMs) -------------------- # R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: # Extension and analysis of the basic method, CABIOS 12:95-107, 1996. # K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting # remote protein homologies, Bioinformatics 14(10):846-856, 1998. # A. Krogh et al., Hidden Markov models in computational biology: # Applications to protein modeling, JMB 235:1501-1531, Feb 1994. # # FSSP representative for each protein chain taken from FSSP: # ------------------Citations (FSSP) ----------------------------------- # L. Holm and C. Sander (1996) Mapping the protein universe. Science 273:595-602. # #SCOP domains found in each protein chain taken from SCOP: # ------------------Citations (SCOP) ----------------------------------- #Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). #SCOP: a structural classification of proteins database for the investigation of sequences and structures. #J. Mol. Biol. 247, 536-540. Sequence_ID Length Target_Evalue FSSP-rep SCOP_domain SCOP_suid 5S 5N 12S 6S 12S 10N 1l5aA 436 9.34e-01 c.43.1.2 75923 c.43.1.2 75924 8pchA 220 2.61e+00 1cs8A 1i19A 561 3.32e+00 1i19A d.58.32.3 61522 d.145.1.1 61523 1fljA 260 4.99e+00 2cba b.74.1.1 27954 1uc8A 280 8.43e+00 1azo 232 8.80e+00 1azo c.52.1.14 33329 1ipaA 274 1.08e+01 c.116.1.1 71254 d.79.3.3 71255 1bgp 309 1.19e+01 1bgp a.93.1.1 18690 1amj 754 1.19e+01 1amj c.8.2.1 30725 c.83.1.1 35401 8acn 754 1.22e+01 1amj c.8.2.1 30724 c.83.1.1 35400 1gk8A 475 1.32e+01 c.1.14.1 65234 d.58.9.1 65235 1oe4A 247 1.51e+01 1el6A 219 1.53e+01 1el6B d.182.1.1 42606 1keiA 316 1.71e+01 d.92.1.2 77349 1g4uS 383 1.77e+01 1g4uS a.24.11.1 16643 c.45.1.2 32691 1hyt 316 1.82e+01 1hyt d.92.1.2 59005 6tmnE 316 1.82e+01 1hyt d.92.1.2 59071 8tlnE 316 1.82e+01 1hyt d.92.1.2 59075 1el6B 219 1.82e+01 1el6B d.182.1.1 42607 1g4wR 383 1.84e+01 1g4uS a.24.11.1 16644 c.45.1.2 32692 2tmnE 316 1.84e+01 1hyt d.92.1.2 59055 1lnsA 763 1.90e+01 a.40.2.1 78101 b.18.1.13 78102 c.69.1.21 78103 1b0jA 754 1.93e+01 1amj c.8.2.1 30719 c.83.1.1 35395 1dmuA 299 1.93e+01 1dmuA c.52.1.4 33294 1cxqA 162 1.94e+01 1cxqA c.55.3.2 33621 6acn 754 2.14e+01 1amj c.8.2.1 30721 c.83.1.1 35397 1c96A 753 2.18e+01 1amj c.8.2.1 30727 c.83.1.1 35403 7acn 754 2.19e+01 1amj c.8.2.1 30717 c.83.1.1 35393 2minB 522 2.25e+01 1qguB c.92.2.3 35610 1bk1 184 2.29e+01 1axkA b.29.1.11 24340 1jvpP 298 2.30e+01 d.144.1.1 67371 1f5mB 180 2.42e+01 1f5mB d.110.2.1 40896 1f5mA 180 2.42e+01 1f5mB d.110.2.1 40895 1mkiA 330 2.48e+01 1a3c 181 2.48e+01 1a3c c.61.1.1 34095 1vsd 152 2.50e+01 1cxqA c.55.3.2 33625 1gpb 842 2.52e+01 1a8i c.87.1.4 35478 1asu 162 2.54e+01 1cxqA c.55.3.2 33626 1c8kA 842 2.65e+01 1a8i c.87.1.4 35491 1pda 315 2.70e+01 1pda c.94.1.1 35751 d.50.2.1 38794 1a8i 842 2.71e+01 1a8i c.87.1.4 35490 1h5uA 842 2.72e+01 1a8i c.87.1.4 60655 1a15A 67 2.76e+01 1a15A d.9.1.1 37451 1hcl 298 2.81e+01 1hcl d.144.1.1 41593 1qo7A 394 2.97e+01 1qo7A c.69.1.11 34697 1gtkA 313 3.00e+01 c.94.1.1 76346 d.50.2.1 76347 1n99A 166 3.00e+01 1qniA 581 3.04e+01 1qniA b.6.1.4 23042 b.69.3.1 27642 1f4qA 165 3.30e+01 1alvA a.39.1.8 17360 1h2aL 567 3.32e+01 1h2rL e.18.1.1 43299 1e1xA 299 3.32e+01 1hcl d.144.1.1 59157 1gz8A 299 3.38e+01 1k94A 165 3.43e+01 a.39.1.8 68333 1j7iA 264 3.51e+01 1j7iA d.144.1.6 62694 1j7lA 264 3.78e+01 d.144.1.6 62697 2fnbA 95 3.79e+01 2fnbA b.1.2.1 21979